BAC Information

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BAC

Clone NameMSMg01-373H01
Chromosome6 (Build37)
Map Location 133,556,861 - 133,557,403
singlet/doubletsinglet
Overlap genenone
Upstream geneA630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372
Downstream geneLOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H01.T7 (MSMg01no373_h01.b1)MSMg01-373H01.TJ (MSMg01no373_h01.g1)
ACCAG479470AG479471
length729755
length of high quality
(start - end)		549 (4 - 552)404 (77 - 480)
definitionCHROMAT_FILE: MSMg01no373_h01.b1 PHD_FILE: MSMg01no373_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:24 2005CHROMAT_FILE: MSMg01no373_h01.g1 PHD_FILE: MSMg01no373_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GAGGATCCGCGGAATTCAAGGAATATGAAGGGACAGCGTATGCAAATGTA
TAGGACATAATGAAAGCAGGACTAAGAGGAAAGTACTTAGCACTAAGTTC
TCCCACCTTCGTTTCTCCATGGGATAGGCAAATGTGTCATGAAAACTTGG
TTTTTTACTGAAGTTCATTGTTGTAGTCAGGGCCTAGGGGTCAAAATGGT
GGGTTGTTTATGACATTTGAGTAGGAGTGATTACTCTTCCATTTCTTTCC
ATCAAAGTGACTAAAAGAAGGGATTGGGGATCCAAGAAAGACTGAGGAAA
AGGAGAAATATTGAATGGAAGCAAAATGGTTTTCTCCTTTTATTGAAGGA
TGATTATTCAAGTTGGATCTCTTAGAAAAAAATATAGGATTACTTGTAAA
GTTAAATGGCAAATTGCCCAAGGTCACAAATGTCCTAAAGGCAAAAGTAA
CCTTCAATTTCTATCCATCCTACTATAAACAATCAGGCCAGCCAGTTAAA
GATTCTGGTGGAATTGAGGGAATAGAATGAATTAGTGAGTTTCTTCTATC
CCAAATGCATCTATCTCTTTTAAATTCAGAAAGGAAATAATTATTCTGTC
CTCCTGTACCAGCCACCCCATGCTCCGCTTGCTTTANTGAAATTATGGAA
ATTGTTTTTATTATCCTTTTGAAATCCCAAATTTGTTCGTGCTATTCTTT
TTTGTTAAAGGTTATTTTAAATTATTATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAATCCTCAAGAACAAGGAA
TAATAGAAAGAACACATCAAATCTTAAAAGCCCAACTCCTAAAACAAAAG
GCAACCTCCCATCCCCCTAATGTACAATTAATGATGGCTCTGACTACCCT
AAACATATTTAACATCTACAAATCTTCAAACATCCTCATATCTTCCTACA
TTGGCATACAGAAAAATTAGCCTCCTCCCCGCCATTCTAGTACTATGGCA
AGATCCTTTGGATGGTATTTGGAATTTACCAAACCCCCTCCTTACAACTG
GGAGGGGTTTTGCTTGCGTCTTTCCACAGGACCAGCCTAAGTCTATCTGG
GTTCCTGCCAGAAATGTCAGGCACCACCCCACTGACCAAGAATATGGCCC
GCCTCTCAGTGGCAGACCAAGGACAGAAAAAAGGGAGGAGGAGGCAGAGG
ATATACCACACCCAGAAGGACAAAAAGATCTCCTGGAAGGACATCCATGA
ACTGGTGATTGCTGCCCAGCCCATGTGTCCTCCAAAAGCCTCTTTCTCCT
TTATTCACTGGGATTTTTCATCATTCCTTCAGGTTTTCTCTATTGGTGCC
GTGTCTCACCTAATTTTTACATATTTTTAACACTGGAGTCTCATGTTTAA
AGAAATTTTTTTTTGCTTTTCNCTCCTAATATTGTACCTCCAATATTGTT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h01.b1 MSMg01no373_h01.b1 CHROMAT_FILE:
MSMg01no373_h01.b1 PHD_FILE: MSMg01no373_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:24 2005
         (549 letters)



>mm_chr6_133556653_133557603
          Length = 951

 Score =  946 bits (489), Expect = 0.0
 Identities = 529/543 (97%), Gaps = 2/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcaaggaatatgaagggacagcgtatgcaaatgtataggacataatgaaagcagga 68
           |||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 209 gaattcaaggaaaattaagggacagcatatgcaaatgtataggacacaatgaaagcagga 268

                                                                       
Query: 69  ctaagaggaaagtacttagcactaagttctcccaccttcgtttctccatgggataggcaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctaagaggaaagtacttagcactaagttctcccaccttcgtttctccatgggataggcaa 328

                                                                       
Query: 129 atgtgtcatgaaaacttggttttttactgaagttcattgttgtagtcagggcctaggggt 188
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgtgtcatgaacacttggttttttactgaagttcattgttgtagtcagggcctaggggt 388

                                                                       
Query: 189 caaaatggtgggttgtttatgacatttgagtaggagtgattactcttccatttctttcca 248
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 389 caaaatggtgagttgtttatgacatttgagtaggagtgattactcttccattcctttcca 448

                                                                       
Query: 249 tcaaagtgactaaaagaagggattggggatccaagaaagactgaggaaaaggagaaatat 308
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 449 tcaaagtgactaaaagaagggattggggatccaagaaaggctgaggaaaaggagaaatat 508

                                                                       
Query: 309 tgaatggaagcaaaatggttttctccttttattgaaggatgattattcaagttggatctc 368
           | ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 509 ttaatggaagccaactggttttcttcttttattgaaggatgattattcaagttggatctc 568

                                                                       
Query: 369 ttagaaaaaaa--tataggattacttgtaaagttaaatggcaaattgcccaaggtcacaa 426
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttagaaaaaaaaatataggattacttgtaaagttaaatggcaaattgcccaaggtcacaa 628

                                                                       
Query: 427 atgtcctaaaggcaaaagtaaccttcaatttctatccatcctactataaacaatcaggcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgtcctaaaggcaaaagtaaccttcaatttctatccatcctactataaacaatcaggcc 688

                                                                       
Query: 487 agccagttaaagattctggtggaattgagggaatagaatgaattagtgagtttcttctat 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agccagttaaagattctggtggaattgagggaatagaatgaattagtgagtttcttctat 748

              
Query: 547 ccc 549
           |||
Sbjct: 749 ccc 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 951
Length adjustment: 10
Effective length of query: 539
Effective length of database: 941
Effective search space:   507199
Effective search space used:   507199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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