BAC Information

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BAC

Clone NameMSMg01-373J07
Chromosome6 (Build37)
Map Location 43,487,840 - 43,701,775
singlet/doubletdoublet
Overlap geneTpk1
Upstream geneEG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373J07.T7 (MSMg01no373_j07.b1)MSMg01-373J07.TJ (MSMg01no373_j07.g1)
ACCAG479578AG479579
length744756
length of high quality
(start - end)		513 (22 - 534)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no373_j07.b1 PHD_FILE: MSMg01no373_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:34 2005CHROMAT_FILE: MSMg01no373_j07.g1 PHD_FILE: MSMg01no373_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,487,840 - 43,488,343)(43,701,298 - 43,701,775)
sequence
GACTCACTATAGTTCAGAGGATCCGCGGAATTCTCATTTTATTTCTTTAT
TTTTTAAATATTTGCCACTATATTATTAAAGCAAAGCTGTGGCTTATATT
TATGAAATATTTTTATGTATAAAAATAGAAAAAATAGGGGCTGAAGAGAT
AGTTCATCACTTGCTTCTCTTGCAGAGGACCTGGGTTCTGTTCCTGGCAC
CCAGATGACAAGTCACAATGGTCTGTAACTCCAGGAGATCTGATACCCTC
TTCTGGCCTCAGAGGACACCAGGTACATTCATACTACACAAACATACTTG
CAAGCAAAACACGTACATGCACAAAAACAAATAATTATTAAAGAGGAATG
GAAAGTTTTTTTTAATTCCCTTAATTTCTACAGGATCTAGGCTGAGTACT
TCATACCATGTACATCTCTCTTAGTATTATTTCATCGAGAGAAAAGAATT
TAAATCAAAAGATTTTGTANATTGTTTTGTTTTGTTTTGTTTTTTTTTAA
CAAAGCACCACAGGAGTTATATACCAGGTGATTAAAACTACAAGGAATTT
TAGTTAAAGAAACTTGCAAAATGACAATACAGCTGCTCTTCTGATTAAAA
TGCACTTTTATTAAATTAGGGCAGCATTACACATCTTAAACACTTTTAAA
TAATTATATCAAAATTGCGGAACTGTGGTTTTCTCCATAAACCCCTAAGG
GCCCATTTCTTCCCCATGGGAAAATTCCTTCCCCTCTATATATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAGAGACTCTAATGGATGAG
AAGCACTTAAAGAAATGTTCAGTGTTCATAGTCAAGAGGAAAATAGACCA
GCATTCTGAGCCTTCCCTTTTCGCATATTCCTTCTCATCAGAAATCCAAG
ACCTACTGCCACTCCTTTTCAACAATAAAAGATGAAATGTTAAGTAGCCA
AAGAAGGCTCCAAAGGAGCAGTGTTGATGACAATGGCCCAACCCAACCTG
ACATATTTCTCAGAAGCCTTGATGGGCTGTGTTAATGCTGCTAACTAGCA
CCTCATCTGCCTTAAAGAATCTCCATGCTAACCACCTAGATGCTGAGCTT
CTGAGCATCACCTCTCTTGTCAAATAGAACTGTAAAACATAAGAAGCTTC
TAATCGATTCTTGGCCTTTTGGCTAAGATCAAGTGAAGAAACTTCTATAG
CTATTGCTGTCCTGCACTCCCTGAGGCAACCAAACTGTTTGTTTTATTCA
ATTGTTCACTCTTCATAGTGGCTGTGTTCAGTGCTTCCTTGCTATGCCTA
CTTACACTAGTATGATGCCCCAAAAGAGTCTTCATAAATGGCTCTGAAAA
AAACCTTAAAGAAAGGATATCTGGCTCACAATCCGGTAAAGGGGGCCAAA
CCCTTAATTTTAGGAAATTGGGGGAAAAGCAACAAACCCCCCATGGGTTT
TGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_j07.b1 MSMg01no373_j07.b1 CHROMAT_FILE:
MSMg01no373_j07.b1 PHD_FILE: MSMg01no373_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:34 2005
         (513 letters)



>mm_chr6_43487633_43488544
          Length = 912

 Score =  845 bits (437), Expect = 0.0
 Identities = 491/510 (96%), Gaps = 8/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctcattttatttctttattttttaaatatttgccactatattattaaagcaaag 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 208 ggaattctcattttatttatttattttttaaatatttgccactatattattaaggcaaag 267

                                                                       
Query: 66  ctgtggcttatatttatgaaatatttttatgtataaaaatagaaaaaataggggctgaag 125
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 268 ctgtggcttatatttat-aaatatttttatgtataaaaatagaaaaaataggg-ctgaag 325

                                                                       
Query: 126 agatagttcatcacttgcttctcttgcagaggacctgggttctgttcctggcacccagat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agatagttcatcacttgcttctcttgcagaggacctgggttctgttcctggcacccagat 385

                                                                       
Query: 186 gacaagtcacaatggtctgtaactccaggagatctgataccctcttctggcctcagagga 245
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 386 gacaactcacaatggtctgtaactccaggagatctgataccctcttctgacctcagagga 445

                                                                       
Query: 246 caccaggtacattcatactacacaaacatacttgcaagcaaaacacgtacatgcacaaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caccaggtacattcatactacacaaacatacttgcaagcaaaacacgtacatgcacaaaa 505

                                                                       
Query: 306 acaaataattattaaagaggaatggaaagttttttttaattcccttaatttctacaggat 365
           ||||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||| |||
Sbjct: 506 acaaataattactaaagaggaatggaaagtatttttta-ttcccttaattcctacaagat 564

                                                                       
Query: 366 ctaggctgagtacttcataccatgtaca-tctctcttagtattatttcatcgagagaaaa 424
           |||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 565 ctaggctgagtaattcataccatgta-agtctctcttagtattatttcattgagagaaaa 623

                                                                       
Query: 425 gaatttaaatcaaaagattttgtanattgttttgttttgttttgtttttttttaacaaag 484
           |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||
Sbjct: 624 gaatttaaatcaaaagattttgtaaattgttttgttttgttttgttttttt--aacaaag 681

                                         
Query: 485 caccacaggag-ttatataccaggtgatta 513
           ||||||||||| ||||||||||||||||||
Sbjct: 682 caccacaggaggttatataccaggtgatta 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_j07.g1 MSMg01no373_j07.g1 CHROMAT_FILE:
MSMg01no373_j07.g1 PHD_FILE: MSMg01no373_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:34 2005
         (478 letters)



>mm_chr6_43701132_43702009
          Length = 878

 Score =  862 bits (446), Expect = 0.0
 Identities = 470/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaacagagactctaatggatgagaagcacttaaagaaatgttcagtgttcatagtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 644 tcaacagagactctaatggatgagaagcacttaaagaaatgttcaatgtccatagtcaag 585

                                                                       
Query: 61  aggaaaatagaccagcattctgagccttcccttttcgcatattccttctcatcagaaatc 120
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 584 acgaaaatagaccagcattctgagccttcccttttcgcagattccttctcatcagaaatc 525

                                                                       
Query: 121 caagacctactgccactccttttcaacaataaaagatgaaatgttaagtagccaaagaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 caagacctactgccactccttttcaacaataaaagatgaaatgttaagtagccaaataag 465

                                                                       
Query: 181 gctccaaaggagcagtgttgatgacaatggcccaacccaacctgacatatttctcagaag 240
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 464 gctccaaagtagcagtgttgatgacaatggctcaacccaacctgacatatttctcagaag 405

                                                                       
Query: 241 ccttgatgggctgtgttaatgctgctaactagcacctcatctgccttaaagaatctccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccttgatgggctgtgttaatgctgctaactagcacctcatctgccttaaagaatctccat 345

                                                                       
Query: 301 gctaaccacctagatgctgagcttctgagcatcacctctcttgtcaaatagaactgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 344 gctaaccacctagatgctgagcttctgagcatcacctctcttgtcaaatagcactgtaaa 285

                                                                       
Query: 361 acataagaagcttctaatcgattcttggccttttggctaagatcaagtgaagaaacttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acataagaagcttctaatcgattcttggccttttggctaagatcaagtgaagaaacttct 225

                                                                     
Query: 421 atagctattgctgtcctgcactccctgaggcaaccaaactgtttgttttattcaattg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atagctattgctgtcctgcactccctgaggcaaccaaactgtttgttttattcaattg 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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