Query= MSMg01no373_k20.b1 MSMg01no373_k20.b1 CHROMAT_FILE:
MSMg01no373_k20.b1 PHD_FILE: MSMg01no373_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:41 2005
(563 letters)
>mm_chr6_56672743_56673705
Length = 963
Score = 1052 bits (544), Expect = 0.0
Identities = 558/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 gttagtcaaatagtgatcaaagaaagggtcttacactgatgaactgtcatgcgcttaaac 60
||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 710 gttagccaaacagtgatcaaagaaagggtcttacactgatgaactgtcatgtgcttaaac 651
Query: 61 cctgaatgatgctattgaagattatcaacaaactcaaaagcagaagtggagaaagatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cctgaatgatgctattgaagattatcaacaaactcaaaagcagaagtggagaaagatggg 591
Query: 121 aaggtttatagactattcccagctgatttaaagggtctagttgtaactcaaagtttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaggtttatagactattcccagctgatttaaagggtctagttgtaactcaaagtttaaat 531
Query: 181 agagttgagtatgtttaaatagagtttaggtgctaaacatactcaagaattctgtaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agagttgagtatgtttaaatagagtttaggtgctaaacatactcaagaattctgtaagtg 471
Query: 241 aaattaagaccgtgtcaggaagaattgggttcacggtgtctgtaacacagtttctttggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaattaagaccgtgtcaggaagaattgggttcacggtgtctgtaacacagtttctttggg 411
Query: 301 aaaatgtggtccaggctttaaatagcaactctggaaacacaattcatccataaattgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaaatgtggtccaggctttaaatagcaactctggaaacacaattcatccataaattgtag 351
Query: 361 actgcctaccttatgttggcagtttttagaattcttgtttcctgctggtaaaattactac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actgcctaccttatgttggcagtttttagaattcttgtttcctgctggtaaaattactac 291
Query: 421 aattggaacttgtacttaaaaattagatgagtttgctaattgatttcaaaacagttaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aattggaacttgtacttaaaaattagatgagtttgctaattgatttcaaaacagttaacc 231
Query: 481 tcctttctacatgaacactcacaatttttttctttctttttttttaggnttatttttatt 540
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 230 tcctttctacatgaacactcacaa-ttttttctttctttttttttaggtttatttttatt 172
Query: 541 tatcatatgtaagtacactgtag 563
|||||||||||||||||||||||
Sbjct: 171 tatcatatgtaagtacactgtag 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_k20.g1 MSMg01no373_k20.g1 CHROMAT_FILE:
MSMg01no373_k20.g1 PHD_FILE: MSMg01no373_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:41 2005
(547 letters)
>mm_chr6_56493746_56494692
Length = 947
Score = 913 bits (472), Expect = 0.0
Identities = 533/554 (96%), Gaps = 7/554 (1%)
Strand = Plus / Plus
Query: 1 tcaaatcacaccccttccatttatggatgaggaattcagaccccatgaccaaagcaaccg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 194 tcaaatcacaccccttccatttatggatgaggaattcagaccccgtgaccaaagcaaccg 253
Query: 61 ggaaggagagggtatatttggtttatacttccgcaccataactcatcattgaaaaaagtc 120
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 254 ggaaggagagggtatatttggtttatacttctgtaccataactcatcattgaaaaaagtc 313
Query: 121 agaagagactggtatctgtcacacattttgaaatgcagatatacaaataaaagccagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agaagagactggtatctgtcacacattttgaaatgcagatatacaaataaaagccagaat 373
Query: 181 tttgtgcccaagtgcaaaggtgctatcactgagcacagtagtaaatatcactacagtagt 240
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 tttgtgctcaagtgcaaaggtgctatcactgagcacagtagtaagtatcactacagtagt 433
Query: 241 aagtttagtggaaacataggccaagaacgtaaatgcag-catttcaccagaggaggccag 299
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 434 aagttaagtggaaacataggccaagaacgtaaatgcagacatttcaccagaggaggccag 493
Query: 300 gtattgtgacatggatttttgaa-ttanaaaa-aaa-aaa-aaa-aaaaaaacc-tctga 353
||||||||||||||||||||||| ||| |||| ||| ||| ||| ||||||||| |||||
Sbjct: 494 gtattgtgacatggatttttgaagttaaaaaacaaacaaacaaacaaaaaaaccctctga 553
Query: 354 ataaaattccttacaaggaactcagtccccatccgggcagcatcccagtcctggtgtttc 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ataaaattccttacaaggtactcagtccccatccgggcagcatcccagtcctggtgtttc 613
Query: 414 tggtactagttcttacacacaggcccatcagctacagccagtctatttgtataatagctt 473
|||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 614 tggtaccagttcttatacacaggcccaccagctacagccagtctatttgtataacagctt 673
Query: 474 cttccaagatgaaaacattacatcctataggaaagtccttnaacaagaaagtacacaaca 533
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 674 cttccaagatgaaaacattacatcctataggaaactccttaaacaagaaagtacacaaca 733
Query: 534 caaaatagcttcag 547
||||||||||||||
Sbjct: 734 caaaatagcttcag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
