BAC Information

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BAC

Clone NameMSMg01-373P11
Chromosome6 (Build37)
Map Location 20,815,455 - 20,815,839
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373P11.T7 (MSMg01no373_p11.b1)MSMg01-373P11.TJ (MSMg01no373_p11.g1)
ACCAG479872AG479873
length718811
length of high quality
(start - end)		509 (49 - 557)111 (77 - 187)
definitionCHROMAT_FILE: MSMg01no373_p11.b1 PHD_FILE: MSMg01no373_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:02 2005CHROMAT_FILE: MSMg01no373_p11.g1 PHD_FILE: MSMg01no373_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCTCTGAGTCTACTGATACC
TTTTGTGTATAACATGACATAAAATAACATTTTGAGGATGGAAGTTTACT
ATGTACTTTTTCATACCTGAGAACAAAGAAAAGATAAATAATATTGCTTT
ATTTTCAACATAAAAAACAAAAGTCTTAAAAGTTAACCTTTAGTTCTTCT
AAATAGGCAATATAGAATTTAAATTCAAGCTAAGGGTCCCTCAGAGACCA
GTCTGCTCCGGTGAGAGTGCTGACTGCAAAAACAACACGGATTCTGAGAC
AGGGAGAAGTGACACAGCTTCTGGGAAAGACCAGAAAGATCTGAAAGACC
CCTTTTCAGGTTCCGGATATCCAGGCACCTTCCCCACCAAAGGAGAAGTG
TCTACCCTGGAGGACTCTTACTGCCTGAGCAGGTAAGGGAGCCATCTTGT
GCCCCGGGTCCCTCAGAGATCAGTCTGCCAGGGTGAGAGTGTGGACTGCA
GAAGCAACCCAGGTTCTGGGACAGGTAGAAACTACACAGCTTCTGGGATA
GAGCCTGTTTTGGTCTCCAGACATCTGTGCACCTTCCCGCCAGAGGAGAG
GTATCTGCCTGGTAGGGCTCTGAATGCTGGAGCAGGGAAGAAAGCCATCT
TACGTCCCAGGGTCCATGGAGACCAGGCGGCACAGGTCATCTCTCAGAAT
GCAAAAGAAACAAATTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCACACAAATGATAAAATCA
CATAGATATCTGTATATACACATATATATGTATATATATGTATATATCTG
TATATATATATATATATATATATATATATATATTCATATATATATATAGA
TATATATATATATATATATATATATATATATATATGTATATATATTTAGT
GTGTGTGAGAGTGGAGCGCGGGCGTGTATATACAGATATACATATATGCA
CAAGGGCGGGGGCGGGGGTTTTTTTTCACCTACGAGCGCGGATGTGGACG
TGAGATATAGACTACCCCATCTTACACCCTTGTGGTTTGTTTACTTTTGT
TCTATTAATGTCTCCCCCCCCACCTTTTATAATACCACCTTGGGCCGTGT
CGCCCTTTGCCCTTCGGCTGCTCAGATCTCTTTCTTTTATTCTCCCTCTG
TCTTGTCTGGCGTGACAGTCTTTCTTGATACGCTTGCTCATATATAATAC
CACTTTTCCTCTATTCCGTATTTCCCATTTGTCCTGTGCATTTTCACCGT
ATTATCGCGTTGTTGGCTCCCCTCTCTGCTTTCTTTGATATCCGTCTGTG
ATTCCCCCTCGAACCTGGTCTCTTTCCTGGTCTCGTTTCCTTTTCCTGTC
TAACTTGCGTCACTCCTTTGTCGCCTCCTACCAATTCTCCGCGGCGTGCC
CCTCCCCTGTTTTGTGTCGGATGTATGCCTCTCGCCTTCCGGTTCTGTTC
ATTATTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_p11.b1 MSMg01no373_p11.b1 CHROMAT_FILE:
MSMg01no373_p11.b1 PHD_FILE: MSMg01no373_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:02 2005
         (509 letters)



>mm_chr6_20815455_20816364
          Length = 910

 Score =  578 bits (299), Expect = e-169
 Identities = 369/403 (91%), Gaps = 19/403 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttttgtgtataacatgacataaaataacattttgaggatggaagtttactatgtactt 60
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 385 ccttttgtgtataacatgacataaaataatgttttgaggatggaagtttactatgtactt 326

                                                                       
Query: 61  tttcata-cctgagaacaaagaaaagataaataatattgctttattttcaacataaaaaa 119
           ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcataccccaagaacaaagaaaagataaataatattgctttattttcaacataaaaaa 266

                                                                       
Query: 120 caaaagtcttaaaagttaacctttagttcttctaaataggcaatatagaatttaaattca 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 caaaagtcttaaaagttaacctttagttcttctaaataagcaatatagaatttaaattca 206

                                                                       
Query: 180 agctaagggtccctcagagaccagtctgctccggtgagagtgctgactgcaaaaacaaca 239
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 205 agctaagggtccctcagagaccagtctgctccagtgagagtgctgactgcaaaaccaaca 146

                                                                       
Query: 240 cggattctgagacagggagaagtgacacagcttctgggaaagaccagaaagatctgaaag 299
           | |||||||||||||||||||||||||||||||||||||     ||||            
Sbjct: 145 cagattctgagacagggagaagtgacacagcttctggga-----caga------------ 103

                                                                       
Query: 300 accccttttcaggttccggatatccaggcaccttccccaccaaaggagaagtgtctaccc 359
            |||||||||||||||| || || ||||||||||||||| ||||||||||||||| ||||
Sbjct: 102 -ccccttttcaggttccagaaattcaggcaccttccccaacaaaggagaagtgtccaccc 44

                                                      
Query: 360 tggaggactcttactgcctgagcaggtaagggagccatcttgt 402
           ||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 43  tggaggactcttactgcctgagcagttgagggagccatcttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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