BAC Information

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BAC

Clone NameMSMg01-374D13
Chromosome6 (Build37)
Map Location 56,350,450 - 56,350,971
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374D13.T7 (MSMg01no374_d13.b1)MSMg01-374D13.TJ (MSMg01no374_d13.g1)
ACCAG480068AG480069
length786767
length of high quality
(start - end)		568 (47 - 614)522 (58 - 579)
definitionCHROMAT_FILE: MSMg01no374_d13.b1 PHD_FILE: MSMg01no374_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:24 2005CHROMAT_FILE: MSMg01no374_d13.g1 PHD_FILE: MSMg01no374_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGATGATTCTCTCTGTTGCTCTTTGGTTTTTGTTTTACTTGGA
ATATTTTTAATTACTGTAGCTTTCTCTTGGCTATTATAAGCCTATTTATT
TATCTACATTTAAATTTGGTAGCTCATAAATACCTAGAAATCCCTCCATA
TTTATGAAATGTAAATATGCAAAGTATATCATTGTAGTTCTCCAAATTTC
CACAGTTGGTGGTAATTTTTCCCATTTTATCTATAGTTTTATTGACTTGA
ATCCTCTCTTTCTTGGTTAATTTGTATTTTGGTTTGTCAACCTTGTTAAT
CTTTTCATAGATATAACTCTTTGTTTCTCTGGTTCTTCATATTCATTGTG
TTGATGTTTCATACAATCACACAATTGAATGATTCTATTTCATTCAGTCC
AGCCCTGTTTCTGACTATCTTTTGCAATCTGTTTGTTTGGGATATTAGTT
TTTCTTGTTTTTCCAAAGCTTTTATGTGCATCATTAAGTTTAATATGTGA
TCTGTCAAAAGTTTGATGGAGGCACATACTGCTATAAACTTCCTCTTAGT
GCTACCTTCATTTTGTCCCACAGATTTTCATTTTTATTCAAGTCTAGAAA
TTTAAAATTTTTCCTTCCTTGACCAAATTATCCTTTAACAGTGAATTCTT
TAAGTCCCATGAGGGTATGAATTTTCTTTGGGGTCCAATGGAGGTGAAAA
TCCCCTTTTTTTCTTCCTTTTAGAGCTGGAGGGCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGAAGTTGACCAAGTATTTTAACAGCATAGCATGTAATAAAGA
TTAGTTCTTTAAAGAGAAAGGACATATAATTCAACAAAACATTTTAGGAA
CATAGACAAGATTGTCTATAAAAATGAGATTGGACCATTTATGTCATTCA
CATAGAAAACTTTAGAAGAAAAAGCTGTGAAGAAGAGAGGGAGATAAAAC
TAAGAAGAATGACAAACAGGAGAAAGAAAATAACCCAAGAAAGAATACGG
AGAAAAACATTATTTTTGCGGTAAAAGCAGTTTGCACCATGCTCCCAGCA
TCTGAGTGAGCATCCAAAGCCACAGGAGAGCCTGAAAATGTTTAGGGAAC
ACTAGAGTACAGAGATGATTATTTGATTCCAGGCTGTAAGTAAGGTTAGA
TTTCTAATTACTCACCCATTTTGAAGTGGATTTATGGTTTCACAATTAAA
GGAGAATATTTCAACCTTGTCTGAACTAAAGTAATAGTGTGAGTGGCTCT
CACGGAAAGTACTGCTGTAAGGCTTGGAACACATTAACGAAAAATCACTT
TCATTTTTTTCTGCCACCTATCTTATCCTATAATGGTGGCAATTAGATAT
GCTATTGGAGTTTAATATTGACTCTTGGTTTTGTCCATCTTTCCCTGACA
TCTTTAATAGCCAACATGACTTAACCCTACTTCATCCCCGGGGCTGGGTA
AAAAAAGGGAGAAGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_d13.g1 MSMg01no374_d13.g1 CHROMAT_FILE:
MSMg01no374_d13.g1 PHD_FILE: MSMg01no374_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:24 2005
         (522 letters)



>mm_chr6_56350250_56351171
          Length = 922

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagttgaccaagtattttaacagcatagcatgtaataaagattagttctttaaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agaagttgaccaagtattttaacagcatagcatgtaataaagattagttctttaaagaga 663

                                                                       
Query: 61  aaggacatataattcaacaaaacattttaggaacatagacaagattgtctataaaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaggacatataattcaacaaaacattttaggaacatagacaagattgtctataaaaatga 603

                                                                       
Query: 121 gattggaccatttatgtcattcacatagaaaactttagaagaaaaagctgtgaagaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gattggaccatttatgtcattcacatagaaaactttagaagaaaaagctgtgaagaagag 543

                                                                       
Query: 181 agggagataaaactaagaagaatgacaaacaggagaaagaaaataacccaagaaagaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agggagataaaactaagaagaatgacaaacaggagaaagaaaataacccaagaaagaata 483

                                                                       
Query: 241 cggagaaaaacattatttttgcggtaaaagcagtttgcaccatgctcccagcatctgagt 300
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggagaaaaacattatttttgaggtaaaagcagtttgcaccatgctcccagcatctgagt 423

                                                                       
Query: 301 gagcatccaaagccacaggagagcctgaaaatgtttagggaacactagagtacagagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagcatccaaagccacaggagagcctgaaaatgtttagggaacactagagtacagagatg 363

                                                                       
Query: 361 attatttgattccaggctgtaagtaaggttagatttctaattactcacccattttgaagt 420
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 362 atcatttgattccaggctgtaagtaaggttagatttctaattactcacgcattttgaagt 303

                                                                       
Query: 421 ggatttatggtttcacaattaaaggagaatatttcaaccttgtctgaactaaagtaatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggatttatggtttcacaattaaaggagaatatttcaaccttgtctgaactaaagtaatag 243

                                                     
Query: 481 tgtgagtggctctcacggaaagtactgctgtaaggcttggaa 522
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtaagtggctctcacggaaagtactgctgtaaggcttggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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