BAC Information

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BAC

Clone NameMSMg01-374I04
Chromosome6 (Build37)
Map Location 147,543,332 - 147,543,632
singlet/doubletsinglet
Overlap geneCcdc91
Upstream geneFgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374I04.T7 (MSMg01no374_i04.b1)MSMg01-374I04.TJ (MSMg01no374_i04.g1)
ACCAG480289AG480290
length744744
length of high quality
(start - end)
453 (49 - 501)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no374_i04.b1 PHD_FILE: MSMg01no374_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:46 2005CHROMAT_FILE: MSMg01no374_i04.g1 PHD_FILE: MSMg01no374_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCAAGACCACTTACTACCTTCTCCCTTCTAAAAGATTTTAC
AAACACTACTAGCAGGCCAAGTGCAGAGCCAGATAAAGAAGCTGGCTGAC
TAAACAAATATAGAAACATAGTTTTAACTGTCAAAATGACTAAGCTTGCA
GCTGCCAGAACAACATTAACAATTCTCTTACCTCACCTCACACTGAATTC
TGGGTCAAATCAACCAATGCCTGAAAAGGTTATTGGCTACACCAATTAAA
ATAAGCCAACTACCCTGTTGCCTAAATCTGCCATTACAAAGGTATAAAAA
ATGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGACTGCGTGCTGAGAG
GAGGTTCCCCAACATGTTGGAATAATAAAAATCCTCATGTGTTTTGCAAT
GATGGTTGTCTCTGGAGTCTTTGTGAGTGAGGGTCTCTTGATAAACTACA
ACACCTTCATTCCCACATGGTCTGCTGGGAGTTCCCTGTCTGCAGCATGA
CTTGTGTTCAATAGTCAAAGACATGCTCACAGCCTGTTTTGGACTTTTGA
CATTTGGCCTTTGACATGAGTTCCCCGACTCTTGNATAGCCCAAGCCCTT
GGGTCTTTTGACGCTGCAAATGCTGTTTCTTTACCTGAGGGGGAGGGCCT
ATCTTTACCCCCAGGTGCCCATAAGCTGGTGGATGTGGTGTCTC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCATGTCATTACTAAAGCTTC
TCATTAGTGCTTTAGAGGAGTTGTGGTCCCGCCAGGGGAGGGGCACAGAT
TTTGTTAATTGCTTGAACCACTGAACTTTAGATTAGTGGCCTGCTGTGGC
TAGAGAACACACATTTCCTTACTCTCTCGAGCCACTGAGTTTGCCACCCT
TTTCTGGAAGGTTCTGCTGCTGGGGCAATCTGGACAGTCATTACAACTCT
GTAGCTTAGTCTTTACTTTCTAAATTGTAGCCAGGTAAGCTGGTTCATGG
GCCCTTCTCAGGACGTGTGTGACCCTCAAGAAGGCAGGGCTTTTCAAAGC
CACTTATGGAAAATGAGTTTTTCCCTCCCAGATCTTTCCTTTTAAGTTTT
TACCAGCCTTTGCCCCAAAAGGTATTCTGTGGCTGAGATGATAAGGATCA
CCATTTTCTGTCACTGGCAAACATCTTAGACGTGGAGCTTTCCCTATGGC
GTAGTGAGGATCTGGCATGAGCCACGTTATGTTATTTCCTTAATATCTCA
CCCCCCCTTTCATTCCCGTCTCAATTCTTTTCACACTTACTTCCCCCCTC
TTTGTTTCATTTCCCCTTTTCTTCTCTTTTCTCCTACTTCCTACCCAATT
CCTCGTCTTAAGTTTTCCTTCCCTCTCTCTCTCCCCTCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_i04.g1 MSMg01no374_i04.g1 CHROMAT_FILE:
MSMg01no374_i04.g1 PHD_FILE: MSMg01no374_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:46 2005
         (446 letters)



>mm_chr6_147543332_147544177
          Length = 846

 Score =  582 bits (301), Expect = e-170
 Identities = 301/301 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccatgtcattactaaagcttctcattagtgctttagaggagttgtggtcccgccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcccatgtcattactaaagcttctcattagtgctttagaggagttgtggtcccgccagg 242

                                                                       
Query: 61  ggaggggcacagattttgttaattgcttgaaccactgaactttagattagtggcctgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaggggcacagattttgttaattgcttgaaccactgaactttagattagtggcctgctg 182

                                                                       
Query: 121 tggctagagaacacacatttccttactctctcgagccactgagtttgccacccttttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggctagagaacacacatttccttactctctcgagccactgagtttgccacccttttctg 122

                                                                       
Query: 181 gaaggttctgctgctggggcaatctggacagtcattacaactctgtagcttagtctttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaggttctgctgctggggcaatctggacagtcattacaactctgtagcttagtctttac 62

                                                                       
Query: 241 tttctaaattgtagccaggtaagctggttcatgggcccttctcaggacgtgtgtgaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctaaattgtagccaggtaagctggttcatgggcccttctcaggacgtgtgtgaccct 2

            
Query: 301 c 301
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)