Query= MSMg01no374_k16.b1 MSMg01no374_k16.b1 CHROMAT_FILE:
MSMg01no374_k16.b1 PHD_FILE: MSMg01no374_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:58 2005
(454 letters)
>mm_chr6_89845285_89846137
Length = 853
Score = 803 bits (415), Expect = 0.0
Identities = 442/453 (97%), Gaps = 7/453 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtgatgtc-tcgtatactctaaagaaataactggaaactgattggaggagaga 63
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgatggcat-gtatactctaaagaaataactggaaactgattggaggagaga 263
Query: 64 gatagactggagagtatctgttgtgtgttttgtcttctctatgaagaaagcctcaagcag 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 gatagactggagagtatctgttgtgtgttttgtcttctctatgaaggaagcctcaagcag 323
Query: 124 gttgcatgtcaacaacttggtcctcattgaggacaatggcaacctcatagggatgcaaat 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 gttgcatgtcaacaacttggtcctcattgaggacaatgacaacctcatagggatgcaaat 383
Query: 184 taaaattcctatcctgaccagcctttgcagaagggaaggagaatattccaaggtgctggt 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaatacctatcctgaccagcctttgcagaagggaaggagaatattccaaggtgctggt 443
Query: 244 cattgctcagaactttgtatgagtagagctgctctgagctgagcagccatttcctccaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cattgctcagaactttgtatgagtagagctgctctgagctgagcagccatttcctccaca 503
Query: 304 atggtgacagtgtcatggaacagaataaatgttttaatgtaacccccccccccaaaaaaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 atggtgacagtgtcatggaacagaataaatgttttaatgtaacccccccc---aaaaaaa 560
Query: 364 --gacaattggaatggtatttaactaggaaacctgagagaacacttaaaatatcaagaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacaattggaatggtatttaactaggaaacctgagagaacacttaaaatatcaagaat 620
Query: 422 gaaggatgaagaagaaaccataaaactgcaagt 454
|||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggatgaagaagaaaccataaaactgcaagt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space: 374292
Effective search space used: 374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_k16.g1 MSMg01no374_k16.g1 CHROMAT_FILE:
MSMg01no374_k16.g1 PHD_FILE: MSMg01no374_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:58 2005
(351 letters)
>mm_chr6_90037173_90037923
Length = 751
Score = 559 bits (289), Expect = e-163
Identities = 295/297 (99%)
Strand = Plus / Minus
Query: 1 tctagtctgtcccatctgaactgaaacaatatagtcaacacaacttgccagttttccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctagtctgtcccatctgaactgaaacaatatagtcaacacaacttgccagttttccctt 388
Query: 61 caggcaaagtgagtacaaactaaacttgtactgcataattcatctgtttaacagacctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caggcaaagtgagtacaaactaaacttgtactgcataattcatctgtttaacagacctct 328
Query: 121 ggtgctttccttgagcccttccctgagctatctagtgagctcttattacctctccaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtgctttccttgagcccttccctgagctatctagtgagctcttattacctctccaaacc 268
Query: 181 aagaggcaggaaggcagtcagtttgtacttatgtactcagtctcctcctgagttctttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagaggcaggaaggcagtcagtttgtacttatgtactcagtctcctcctgagttctttcc 208
Query: 241 ccgtgccttttttatttttatttattttattaaatctatttacttatttatttattt 297
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 ctgtgccttttttatttttatttattttattaaatctatttatttatttatttattt 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
