BAC Information

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BAC

Clone NameMSMg01-374L03
Chromosome6 (Build37)
Map Location 58,977,144 - 58,977,412
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
Downstream geneTigd2, Gprin3, EG634166, EG627108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L03.T7 (MSMg01no374_l03.b1)MSMg01-374L03.TJ (MSMg01no374_l03.g1)
ACCAG480429AG480430
length791788
length of high quality
(start - end)
518 (45 - 562)427 (58 - 484)
definitionCHROMAT_FILE: MSMg01no374_l03.b1 PHD_FILE: MSMg01no374_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:01 2005CHROMAT_FILE: MSMg01no374_l03.g1 PHD_FILE: MSMg01no374_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCG
GAATTCTTGATCATTTTATGGGAAAACAGTCATTGTTGAACTAGTCAGAC
CACGTCCTGTAAGCCATTCTTTTCTTTTCTTTTTTTTTTTTACAGTATTA
TGAAAAACTGTCACCATACAAATTATGCATCACATTACTGAACTGTGTTA
AATTTCTTTTTTTCTGTTTTTTTAATTAGGTATTTTCTTCATTTACATTT
CCAATGCTATCCCAAAAGTTCCCCATACACCCCTCCTCCACTCCCCTACC
CACCCACTTCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATA
AAGTTTTCAAGACCAAGGGGCCTCTCTTTCCAATGATGGCTGACTAGGCC
ACCTTCTGATACATATGCAGCTAGAGACACGAGCTCCAGGGGGGTACTGG
TTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC
TTGGTTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTAT
AAATGACTGTGAGCATCCACTTATGTGTTTGCTAGGACCCGGCATAATCT
CACAAGAGACAGTTATATTAGGGTCCTTTCAGCATAACCTTGCTAGTGTA
TGCAATGGTGTCAGCGTTTTGGAGTCTGATCAAGGTATGTGCCCCCCGGG
AATGGCAGTTCTCTTCAATGGTCATCCCCTTTTTTCCACATTCTCAACTT
TTTTCCCCTGTTACTCCTCTCCTCCGGTTGATTCTGCCCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGCTATTGCTGGATTGGCCTGCCTGGAGACATAGGAGAATGGA
TAATGGCAATGTAGGCTCTGCTGTGCCTTAGTGCTTGCTTTCTTTGCCTG
GCATGTCTAGGTTCATTTTCCTCTGATATAGAATGTTCTCCATTCCCATA
CCCCAAAATTGCATTGCTTTATACTTATCTGGTCTCGTTTTAGCCCCATG
GCACTGTTACATGGGTACTCTTGCTGTTGCTTTTGCCTCTCAGTTACAGT
AGGAGAGATGGATTAAAAAGAAAACAGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCACCCTTATCTTATAATAGCCAGAAGCCG
TAAAGAACCCTGATGTCTCTCTCATTAGTAACGGACTCATAAAAAGTGTC
ACCTCCTACTCCATCGTATTTACACTTTCATTCATTCAAACACAACGTAC
TTTTTTAAATTCCTTTACCCACTGTTATTCGACCTGTTTGTTATCTTTCC
CTTCTATTACTTACCCCATTTCTTTAACCTTTCTCTTTTCCTCATCTATT
TTTCTCTTGATACTACGTTCTCATTCACCCTCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l03.g1 MSMg01no374_l03.g1 CHROMAT_FILE:
MSMg01no374_l03.g1 PHD_FILE: MSMg01no374_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:01 2005
         (427 letters)



>mm_chr6_58976944_58977770
          Length = 827

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctattgctggattggcctgcctggagacataggagaatggataatggcaatgtaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agctattgctggattggcctgcctggagacataggagaatggataatggcaatgtaggct 410

                                                                       
Query: 61  ctgctgtgccttagtgcttgctttctttgcctggcatgtctaggttcattttcctctgat 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgctgtgctttagtgcttgctttctttgcctggcatgtctaggttcattttcctctgat 350

                                                                       
Query: 121 atagaatgttctccattcccataccccaaaattgcattgctttatacttatctggtctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atagaatgttctccattcccataccccaaaattgcattgctttatacttatctggtctcg 290

                                                                       
Query: 181 ttttagccccatggcactgttacatgggtactcttgctgttgcttttgcctctcagttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttagccccatggcactgttacatgggtactcttgctgttgcttttgcctctcagttac 230

                                        
Query: 241 agtaggagagatggattaaaaagaaaaca 269
           ||||||||||||| |||||||||||||||
Sbjct: 229 agtaggagagatgcattaaaaagaaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)