BAC Information

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BAC

Clone NameMSMg01-375M01
Chromosome6 (Build37)
Map Location 135,805,540 - 135,806,113
singlet/doubletsinglet
Overlap geneGrin2b
Upstream geneCrebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375M01.T7 (MSMg01no375_m01.b1)MSMg01-375M01.TJ (MSMg01no375_m01.g1)
ACCAG481231AG481232
length727729
length of high quality
(start - end)
578 (57 - 634)560 (87 - 646)
definitionCHROMAT_FILE: MSMg01no375_m01.b1 PHD_FILE: MSMg01no375_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:26 2005CHROMAT_FILE: MSMg01no375_m01.g1 PHD_FILE: MSMg01no375_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTTGTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATTTCTTCACTTCTGAGGGGTTTGTGTGTGTGA
CAGGTGGCAGATTGACAGCCCCTAGAGAGCAGGGCTCTCTTTCTATTCTA
TATGTCCTGACCATCCATGACTCCAGTCATCCCTGGGGTCGAGGAGAGCA
TGACTGGTTAAAATCCCGAGGGGAAGGCACTGAGGTCCGTGCTTGGGCTG
TTGGCTCCACCACGGTAGAAGTCTCTGGATTCTTTGTGTCCTTCTCTTCT
AACCATGGTTTCTGTTGACAGCATTATGCTCAGTGTGAGGCTATGTGAAA
AGGAACATGAGCTTGGGGATTACTAAAAAGTGGATGGATTCAATCCCTGC
TGCCAACAACCTCAGGCTTCATTATAACATAGCTATTACATAATCACATA
TAATATATGCTATTATTTTATAGCATTGCTGTGAGAATTTAAAATAACAT
AAAACACCCAGAACAGAGCTTGGCATGTGTTCAATAAATGATAGCATTCA
TTGTTGGGCTTTCTTTTATTGCCCAGCCAGAGCTGAAATATGACTTCCAA
GCATTTTTACTTATGTGTTAGAAAGCTAGGAGATTAATTTACCTCAGGGA
GACAGAATTCTGAAGCTGTATGTTGAAAAAAAAAGAAAGTGCCTATTTAG
CAATTCGGCACCCAATGCTGGAGTATG
NCCCCACTCTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACAAGGAATA
CACACACCAAAACGTATGGGCCACAATGAAAGCAGTGTTAAGATGAAAAT
TCATAGCTCGTACCAACAATTTAACAGCACATCTCAAAGTTCTGGAATAA
AAGAAGTAATCAAACTTAAGGAGTGATAAATAATCAAACTGAGGGCTAAA
ATCAAAACCACAGAAACAAATAGAACAATACAAGGAATCAATGCGTGAAA
AGAGTTGGTTCTTTGGGAAAATCAACCCAATAGACAAACCCTTACCCAAA
CTAAGCAAGAGGCAGTGAAAGCATATCCAAATTAACAAAATTAGAAATGA
AGAGAGGGACATGACAGATACACAGGTCATCCAGACAATAATAAGGGCAA
ACTTTAAGAACCTATGCTCCACCAAACTGGAAAATCTAAAAGAAACAGGT
ACTTTTCTGAATAGGTACCACTTACCAACGTTAAGTCAAGATCTGGTAAA
CAATTTAAATAAATCTATAATCCCTAGTGAAATAGAAGCGGTCATTAAAA
AAACTCCTAACAACAACAACAACAACAACAACTACAACAATAACAATAAC
AAAAAAGCCCAGAATCTGATGGTTTTAGTGCAGAGCCCTACCAGACTTTC
TAAGAAGAGTCAATGTCTTAAAACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_m01.b1 MSMg01no375_m01.b1 CHROMAT_FILE:
MSMg01no375_m01.b1 PHD_FILE: MSMg01no375_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:26 2005
         (578 letters)



>mm_chr6_135805521_135806498
          Length = 978

 Score = 1110 bits (574), Expect = 0.0
 Identities = 574/574 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttcttcacttctgaggggtttgtgtgtgtgacaggtggcagattgacagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaattccatttcttcacttctgaggggtttgtgtgtgtgacaggtggcagattgacagcc 534

                                                                       
Query: 65  cctagagagcagggctctctttctattctatatgtcctgaccatccatgactccagtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctagagagcagggctctctttctattctatatgtcctgaccatccatgactccagtcat 474

                                                                       
Query: 125 ccctggggtcgaggagagcatgactggttaaaatcccgaggggaaggcactgaggtccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccctggggtcgaggagagcatgactggttaaaatcccgaggggaaggcactgaggtccgt 414

                                                                       
Query: 185 gcttgggctgttggctccaccacggtagaagtctctggattctttgtgtccttctcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcttgggctgttggctccaccacggtagaagtctctggattctttgtgtccttctcttct 354

                                                                       
Query: 245 aaccatggtttctgttgacagcattatgctcagtgtgaggctatgtgaaaaggaacatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaccatggtttctgttgacagcattatgctcagtgtgaggctatgtgaaaaggaacatga 294

                                                                       
Query: 305 gcttggggattactaaaaagtggatggattcaatccctgctgccaacaacctcaggcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gcttggggattactaaaaagtggatggattcaatccctgctgccaacaacctcaggcttc 234

                                                                       
Query: 365 attataacatagctattacataatcacatataatatatgctattattttatagcattgct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 attataacatagctattacataatcacatataatatatgctattattttatagcattgct 174

                                                                       
Query: 425 gtgagaatttaaaataacataaaacacccagaacagagcttggcatgtgttcaataaatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtgagaatttaaaataacataaaacacccagaacagagcttggcatgtgttcaataaatg 114

                                                                       
Query: 485 atagcattcattgttgggctttcttttattgcccagccagagctgaaatatgacttccaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atagcattcattgttgggctttcttttattgcccagccagagctgaaatatgacttccaa 54

                                             
Query: 545 gcatttttacttatgtgttagaaagctaggagat 578
           ||||||||||||||||||||||||||||||||||
Sbjct: 53  gcatttttacttatgtgttagaaagctaggagat 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)