BAC Information

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BAC

Clone NameMSMg01-376C06
Chromosome6 (Build37)
Map Location 104,502,604 - 104,502,936
singlet/doubletsinglet
Overlap geneCntn6
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376C06.T7 (MSMg01no376_c06.b1)MSMg01-376C06.TJ (MSMg01no376_c06.g1)
ACCAG481529AG481530
length757732
length of high quality
(start - end)		613 (43 - 655)333 (73 - 405)
definitionCHROMAT_FILE: MSMg01no376_c06.b1 PHD_FILE: MSMg01no376_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:58 2005CHROMAT_FILE: MSMg01no376_c06.g1 PHD_FILE: MSMg01no376_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAGACTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAATGCAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACGAGGCTGTCCACTTTCTCCCTACCTATTCAACATTGTACT
TAAATCCTAGCCAGAGCAATTCGTAAAGAAAAGGAGATCAAGGGAGTATA
AATTGGAAAGGAAAAAATCAAAATATCACTTTTTGCAGATGATATGATAA
TATATGTAAGTGACCCTAAAAATTCTACCAGTAGACTCCTGAACCTGATA
AACAGCTTCAGAGAATTAGCTGGATATAAAATTAACTCAAACAAGTCAAT
GGCCTTTCTCTACACAAAGGATAAACAGGCTGAAAGAGAAAATTGGGAAA
CAAAATCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACT
ATAACTAAGGAAGTGAAATATCTGTATGATAAGAACTTCAAGTCTCTGAA
GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATGGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTTCCAATCAATTCTTCAACGA
ATTAAAAAGGGGAAACTGCCAATTCTTCCTGGATAACACCAGACCTAGGA
TAGCACN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGAATATAAATATTAAAGTAAAGCAA
TTGGAATAAAGACTAGAAGTGGAACTGAAAACTTTTTTTCAGCTCAAATT
TGACCCCTTGACTTAAAAGGTCAAATGTGAGGTTGTCCATGAAGATTGCT
CTTCCCAAGAGTTGCACTGATATCTCCTTTATAATCGAAGTTTCTACCAT
TGTTGCTGTCATTGTATTCCCCCTGGAAATGGTAGGTCTTAAGGGCACAG
TTAACATTGTGATATATAGTCTAGAAATGCAATCCATGAGCTGAGCAGTA
GATAGGATGTTAATCATCCATGAGTAGCCACATGAAGTCATGTCTCATCT
CCTAGTGTACACAAATGGAGGTTCTCATTGATGCCAGCANGCTCAATGTG
CCAGCTTCCCCAAGACCATTTAGTTGTTCTGTGGCTAATTCGAAGGCTGG
TTAANGGAAATGTTCCCCCTGAATTAATGGGAAACTTGGATATTTCCTGG
GAAGGTGAAATTACCCCCCAAAAAAAAAGGGGAACCCCCTTTTAACCCCC
CTATTTTCGAATTTGAATTTTGGGAACAGAAAAAAAATCTATTCTTTTTT
TTTCCCGCCAATATTTCACCATTATTTGTTAACCTCTCCCAAATATAAGT
AGTGGGGTTCCCTATGGAAAATTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_c06.g1 MSMg01no376_c06.g1 CHROMAT_FILE:
MSMg01no376_c06.g1 PHD_FILE: MSMg01no376_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:58 2005
         (333 letters)



>mm_chr6_104502404_104503136
          Length = 733

 Score =  636 bits (329), Expect = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaatataaatattaaagtaaagcaattggaataaagactagaagtggaactgaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaatataaatattaaagtaaagcaattggaataaagactagaagtggaactgaaaac 260

                                                                       
Query: 61  tttttttcagctcaaatttgaccccttgacttaaaaggtcaaatgtgaggttgtccatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttcagctcaaatttgaccccttgacttaaaaggtcaaatgtgaggttgtccatga 320

                                                                       
Query: 121 agattgctcttcccaagagttgcactgatatctcctttataatcgaagtttctaccattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattgctcttcccaagagttgcactgatatctcctttataatcgaagtttctaccattg 380

                                                                       
Query: 181 ttgctgtcattgtattccccctggaaatggtaggtcttaagggcacagttaacattgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctgtcattgtattccccctggaaatggtaggtcttaagggcacagttaacattgtga 440

                                                                       
Query: 241 tatatagtctagaaatgcaatccatgagctgagcagtagataggatgttaatcatccatg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tatatagtctagaaatgcaatccatgagctcagcagtagataggatgttaatcatccatg 500

                                            
Query: 301 agtagccacatgaagtcatgtctcatctcctag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 agtagccacatgaagtcatgtctcatctcctag 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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