BAC Information

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BAC

Clone NameMSMg01-376C12
Chromosome6 (Build37)
Map Location 140,402,553 - 140,402,969
singlet/doubletsinglet
Overlap genePlekha5
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810
Downstream geneAebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376C12.T7 (MSMg01no376_c12.b1)MSMg01-376C12.TJ (MSMg01no376_c12.g1)
ACCAG481541AG481542
length753750
length of high quality
(start - end)
498 (69 - 566)417 (77 - 493)
definitionCHROMAT_FILE: MSMg01no376_c12.b1 PHD_FILE: MSMg01no376_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:59 2005CHROMAT_FILE: MSMg01no376_c12.g1 PHD_FILE: MSMg01no376_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAATATTCTCGGCTGAATAGTAAGATCCAGTTTCAAGAACTAA
TACTAATAATAATTTATAAACCATCCATCTAGTAAAGGGTTAGTTGTTAA
ATATATATAAGGAACTTAAATAATTAAATAAGATAATCTGAAAAAATAGA
CAAAGAACCTAAGTGACATTTCTCAAAGAAAGCACAAGTGGACGAAATGT
ATTTGAAAAAAAGATAATATGCCATCAAAGATGTGGAAAAGGGGAGCCCT
GGTATATTGCTGATGGGGATGTGAACTACCACAGCACCATGGAAAAGAGC
ATGGAAACTCCCTGGAGAGTGGAGAGTGCAGCGCTGACGGGAGGTAGGCA
CAGTGGTGAATGTCTGCAGAGGATCTCTGAGTTTGTTACCTGCCCTACTT
ACAGAACAAGTTCTGGACAGGCCAGGATACATAATGAGACCTCCCCTCAA
AGAAAATCAGATAGAATGACCATGTGGTCTAGCAATACTGAGGCCTGGAA
TAGATCTGAAGGAAGTCCATCAGAGTGGGAAACTGTCCCTGTGCTCCCTG
AAGCACACACATTCCAGCACGTTCTTCATTCTTCTAAAAGAAAACAGTTG
CTGTGGAATAATGCCTATAGCAGTAACCCATTCTACCCGAAGCCCCCAGC
CTTGATTCCCCCCCTGCCTAAAAAGGGCTGAAGGAGGACCTTGGGCTGGC
TGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATCCATCTGTCTCCAGAATG
CTGGGAGAGCTATGATTAAAGACATGCTCTACCACACCTACACACACACA
CACACACACACACACACACACACAAGTTTTCTGGGCCAGGTATGTATACA
CTGATGGGTTCTGGGCTGTCCCTAGGCCCAGCTTCCACACACACTCATTC
CCACCACTGGAGCTGTGGCCGCCTGCTTCTCATCTCTGCACTTGATTGTC
TACTTTTGCTTCTTGTAGACATTCCAATAGGGAAGAATCACATGCTTCTA
AGTTCTCTCGTTAAATATGTTACAGCCAAAAGTAATAAGGCAAGTTAGTA
AACCACAGTGCATAGCCACAAAGAAATGCTGTAATTTCAAGTGTCTGTCT
GTCTTTTTTTTTTTTTTTTTTTCCTTTAATGATATGGGAGCGGAAGAGAT
GGCTCACCAGTTAGAAGAGAACTCTCTGGTTCCAGTGCCCATACCCAGCA
GCCCAGCTATTACTCCAGCTCCAAGGGATCAAATGCTTTTTGGCCTCTGC
GGGGACCTGGACTCACACCCATATACTCACACCCCGGGGGGAAAAAGACT
TTATTTACACGGGGGGATTGACAAACACTGGGGTACTCTCATCCGGGTGT
TCCTCACGGAGGCCAAGGGTATCTTAAGTCCCCGAACAACTTGGTAAAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_c12.g1 MSMg01no376_c12.g1 CHROMAT_FILE:
MSMg01no376_c12.g1 PHD_FILE: MSMg01no376_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:59 2005
         (417 letters)



>mm_chr6_140402255_140403071
          Length = 817

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatccatctgtctccagaatgctgggagagctatgattaaagacatgctctaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agagatccatctgtctccagaatgctgggagagctatgattaaagacatgctctaccaca 656

                                                                       
Query: 61  cctacacacacacacacacacacacacacacacacacaagttttctgggccaggtatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctacacacacacacacacacacacacacacacacacaagttttctgggccaggtatgta 596

                                                                       
Query: 121 tacactgatgggttctgggctgtccctaggcccagcttccacacacactcattcccacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tacactgatgggttctgggctgtccctaggcccagcttccacacacactcattcccacca 536

                                                                       
Query: 181 ctggagctgtggccgcctgcttctcatctctgcacttgattgtctacttttgcttcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctggagctgtggccgcctgcttctcatctctgcacttgattgtctacttttgcttcttgt 476

                                                                       
Query: 241 agacattccaatagggaagaatcacatgcttctaagttctctcgttaaatatgttacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agacattccaatagggaagaatcacatgcttctaagttctctcgttaaatatgttacagc 416

                                                                       
Query: 301 caaaagtaataaggcaagttagtaaaccacagtgcatagccacaaagaaatgctgtaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caaaagtaataaggcaagttagtaaaccacagtgcatagccacaaagaaatgctgtaatt 356

                                                                    
Query: 361 tcaagtgtctgtctgtctttttttttttttttttttcctttaatgatatgggagcgg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcaagtgtctgtctgtctttttttttttttttttttcctttaatgatatgggagcgg 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)