BAC Information

Click to search

BAC

Clone NameMSMg01-376N09
Chromosome6 (Build37)
Map Location 134,221,109 - 134,390,949
singlet/doubletdoublet
Overlap geneLOC100043660, Bcl2l14
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
Downstream geneLrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376N09.T7 (MSMg01no376_n09.b1)MSMg01-376N09.TJ (MSMg01no376_n09.g1)
ACCAG482058AG482059
length750744
length of high quality
(start - end)		512 (44 - 555)407 (70 - 476)
definitionCHROMAT_FILE: MSMg01no376_n09.b1 PHD_FILE: MSMg01no376_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:49 2005CHROMAT_FILE: MSMg01no376_n09.g1 PHD_FILE: MSMg01no376_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,221,109 - 134,221,617)(134,390,547 - 134,390,949)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAGCAATGCACATTGTGCGTTGGGATTCCATAAGCCAAATCAAAGC
TTTGGGGTTGGCACCTCCAAGTCTGCCTTTGTGAGCTAAGGTTTGACATT
ACTCTCACCGATAGGTTCACCATGCTACAAAGGCGCACACAGCATCAGAT
AAGTGATGGTGGTTCATTTGCATTACACGTACTCACAGACAGTCACCCCA
CATGTCCAAATGGACACGGACTGCAGAATGAGGCCAGGCAGACACACAAT
CATGCAGAGAGTCGGCATGCTTCACCATCCAGACCTCTTTAGCAATCAAT
CTGCTACAAAGACGAGCAGTTTAAAGGGCAGCTCAGACAGATGACCTGCC
CTTGCAAACTGCACATCGATTTATATACTTAGGCCCACTTGCCTGCCTAA
CCGCCCTAATCTAAAAGGGAAGACAAAGCACGTGCTGTCATCTGTCCTAG
AATTATGCGGCATAGCCGGAATGGACATGTGACCAGGTGTTGGAGGCCTC
TCTGAGCACAGGCTAGATCAGAACTGGGCCAACCTGAACTGGAATGCTTC
CTAACTACCTGAAGATCTTAAAAAACAGAACTGCATTTTTGTTGTTTTGT
TCCACATGGGCCCGCGTAGCCAAGCTGGCCTCCGCTCCCGGGGAGCTAAG
AAAACCTGAACTGTGGATTTCCTGCTCTGCCCCCCAAAGGAATGATAAAA


TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGTGCGTGTGTGCTGCACGTGGAGGATCGT
AGTGTGCATGTGGAAGTCAGAAACAACCTTGGGTGCTAGACTTCATCTGC
TACCTTATTTTGTCATAGGACCGGCCTCTTAGTTGTTTTCCCTTTGCAGA
CACCATGCTTGCTGGCCTGAAGGGGTCTGGAGATTGTCCTGACTCTGTCC
TTTATCTCCCCATTGGAGTACTGGGGTTACGGATGCTCATTTTATGTAGG
TTCTAGAGATTTGAAACCTGGTCCTCGTGCTTGTATGCCCAGCTCTTTTA
CTCCGTAAGTCATCTTCCCAGCCCAAGCATTCAAATCTTATTAACGTAGA
AATAAATGTCCCCTTTTGCCTTTGAGACCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNTNNNN
NNNNTNNNTNTTTNTNTTTNTTTTTTTTNTTTTTTTTTTTTNTTTTTTTT
TTNNTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTNNTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTNTTTNTTTTNTT
TTTTTTNTTTTTNTTTTNTTTTTTTTTNTTTNNNTTTTTTTTTTTTTTTT
NTTTTTTTNNNTTTNNTNTNTTTTNTTTTTTNTNNNTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_n09.b1 MSMg01no376_n09.b1 CHROMAT_FILE:
MSMg01no376_n09.b1 PHD_FILE: MSMg01no376_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:49 2005
         (512 letters)



>mm_chr6_134220906_134221817
          Length = 912

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagcaatgcacattgtgcgttgggattccataagccaaatcaaagctttggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctagcaatgcacattgtgcgttgggattccataagccaaatcaaagctttggg 263

                                                                       
Query: 64  gttggcacctccaagtctgcctttgtgagctaaggtttgacattactctcaccgataggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttggcacctccaagtctgcctttgtgagctaaggtttgacattactctcaccgataggt 323

                                                                       
Query: 124 tcaccatgctacaaaggcgcacacagcatcagataagtgatggtggttcatttgcattac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaccatgctacaaaggcgcacacagcatcagataagtgatggtggttcatttgcattac 383

                                                                       
Query: 184 acgtactcacagacagtcaccccacatgtccaaatggacacggactgcagaatgaggcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgtactcacagacagtcaccccacatgtccaaatggacacggactgcagaatgaggcca 443

                                                                       
Query: 244 ggcagacacacaatcatgcagagagtcggcatgcttcaccatccagacctctttagcaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagacacacaatcatgcagagagtcggcatgcttcaccatccagacctctttagcaat 503

                                                                       
Query: 304 caatctgctacaaagacgagcagtttaaagggcagctcagacagatgacctgcccttgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatctgctacaaagacgagcagtttaaagggcagctcagacagatgacctgcccttgca 563

                                                                       
Query: 364 aactgcacatcgatttatatacttaggcccacttgcctgcctaaccgccctaatctaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aactgcacatcgatttatatacttaggcccacttgcctgcctaaccgccctaatctaaaa 623

                                                                       
Query: 424 gggaagacaaagcacgtgctgtcatctgtcctagaattatgcggcatagccggaatggac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggaagacaaagcacgtgctgtcatctgtcctagaattatgcggcatagccggaatggac 683

                                        
Query: 484 atgtgaccaggtgttggaggcctctctga 512
           |||||||||||||||||||||||||||||
Sbjct: 684 atgtgaccaggtgttggaggcctctctga 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_n09.g1 MSMg01no376_n09.g1 CHROMAT_FILE:
MSMg01no376_n09.g1 PHD_FILE: MSMg01no376_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:49 2005
         (407 letters)



>mm_chr6_134390390_134391196
          Length = 807

 Score =  779 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgcgtgtgtgctgcacgtggaggatcgtagtgtgcatgtggaagtcagaaacaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggtgcgtgtgtgctgcacgtggaggatcgtagtgtgcatgtggaagtcagaaacaacct 501

                                                                       
Query: 61  tgggtgctagacttcatctgctaccttattttgtcataggaccggcctcttagttgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggtgctagacttcatctgctaccttattttgtcataggaccggcctcttagttgtttt 441

                                                                       
Query: 121 ccctttgcagacaccatgcttgctggcctgaaggggtctggagattgtcctgactctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccctttgcagacaccatgcttgctggcctgaaggggtctggagattgtcctgactctgtc 381

                                                                       
Query: 181 ctttatctccccattggagtactggggttacggatgctcattttatgtaggttctagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttatctccccattggagtactggggttacggatgctcattttatgtaggttctagaga 321

                                                                       
Query: 241 tttgaaacctggtcctcgtgcttgtatgcccagctcttttactccgtaagtcatcttccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgaaacctggtcctcgtgcttgtatgcccagctcttttactccgtaagtcatcttccc 261

                                                                       
Query: 301 agcccaagcattcaaatcttattaacgtagaaataaatgtccccttttgcctttgagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcccaagcattcaaatcttattaacgtagaaataaatgtccccttttgcctttgagacc 201

                                                      
Query: 361 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |