BAC Information

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BAC

Clone NameMSMg01-377G14
Chromosome6 (Build37)
Map Location 35,516,652 - 35,517,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik, Chrm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377G14.T7 (MSMg01no377_g14.b1)MSMg01-377G14.TJ (MSMg01no377_g14.g1)
ACCAG482498AG482499
length754748
length of high quality
(start - end)		480 (70 - 549)429 (77 - 505)
definitionCHROMAT_FILE: MSMg01no377_g14.b1 PHD_FILE: MSMg01no377_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:34 2005CHROMAT_FILE: MSMg01no377_g14.g1 PHD_FILE: MSMg01no377_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGGTTTACGCCAAGAGAAACCACGTGTAACATTTGGAGGA
TGGGTGACAAGTTGAGAACTTGAATTGATAACGACCCATCTAGAGCCTCA
GATGATAAAACTGGAAGCAGTGAGAAATGATCTCTCTATAGGCCCCATAG
GAGACTTTTATAATGATTAGAATATCCCATGGAAGGAGCAGGCACCTTGC
AGGATAAAGGGTAGCTCTCTCTGCCGCTGCTTGGATGATGTTCCTTCAAA
GGTACTACTGCAGTGGCTTTCACTTTGGGCAGAAGTTTGGAAGGTGACTT
CTGAAGATTCAATTTAAATTCCAAGATGCTTTAGTTTTCATATCTTTAAG
AACTGAGCCCGAGAAAATATCTGTGTACTCACTGTGTGTGATGTGGACAA
ACTGTAGATTCTTCCCGGACTCCAAGCATCTAGTCTGTGAAATGAGCTCT
TGAGTGCTAGATCTATAATACATACATACCCCTTACATTTGAATGGCACC
TATTCTGAAGGATAAAAGAGAAAGACTGGGACTTTTATCACCATTGGTGA
CCTCTCGATTCTATCCCCAAGATAATATTTTAGTAGCCCATTAAACACTA
CCATCCTTCCCTTACCTTCTTAAGGTTACGAACGTACATATCCTCCTTTG
TTAACGCCCCTTATCTCCCTTTCCTTTTGGGGCCCATTTCCCTCGCCACA
ACCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCATAGAAAAGGACCTACTG
AGCAGAATACCAATGGCAAAGACACTAAGGACAAAAATTAATAAATGAAA
CCTCATAAAACTAAAAAGCTACTGTATTACAAAGGACACCATCATCTGGA
CAAAGTGGCAGGCTCCGGAGCAAGAAAAGATTTCCTTTTACCAGCTACAC
ATCCTATAGAGGGCTAATGTCTTAAATATATAAAGAATTCAAAACTCTGG
GCATCAAGAAAACAAATAACCCAATTTAAAATGGAGTGCAGATCTAAACA
GAGGATTCTTTAAAGAGGAAACATGTTTGAAAAGAACTTAAAGAAATGTT
CACCATTCTTAGTCATCAGAGAAATGCAAATCAAAACTACTTTGAGATTT
CATCTTATCTATGTCAGAAGATCAATAAACAAGTAACAGGCAATGTTAAT
GAGGATGTGGTGTGAGGGGAACACTCATTTATTGCTAATGGGAGTGTAAA
CTTGAACAGAAACTATGAAAATCAGTATGGCCGTTCCTAAGAAAGTGTGG
ATAGATTTTATTCTAGACCCAAAAAACCCAACTTGAGGAATTATGGAAAA
AACTTTTTTTTCTACTAACAAAACCTTGTTCCCCCCGGTGTTTTCCACCT
CACCCCCAAAAACCCAAAATGGGGAATTGGACCAATCTTCGCTGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_g14.b1 MSMg01no377_g14.b1 CHROMAT_FILE:
MSMg01no377_g14.b1 PHD_FILE: MSMg01no377_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:34 2005
         (480 letters)



>mm_chr6_35516452_35517331
          Length = 880

 Score =  837 bits (433), Expect = 0.0
 Identities = 466/477 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagagaaaccacgtgtaacatttggaggatgggtgacaagttgagaacttgaattgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ccaagagaaaccacgtgtaacatttggaggatgggtgacaagttgagaacttgaattgtt 260

                                                                       
Query: 61  aacgacccatctagagcctcagatgataaaactggaagcagtgagaaatgatctctctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgacccatctagagcctcagatgataaaactggaagcagtgagaaatgatctctctat 320

                                                                       
Query: 121 aggccccataggagacttttataatgattagaatatcccatggaaggagcaggcaccttg 180
           |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct: 321 aggccccataggagacatttataatgattagaacattccatggaaggagcaggcaccttg 380

                                                                       
Query: 181 caggataaagggtagctctctctgccgctgcttggatgatgttccttcaaaggtactact 240
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggtaaagggtagctctctctgctgctgcttggatgatgttccttcaaaggtactact 440

                                                                       
Query: 241 gcagtggctttcactttgggcagaagtttggaaggtgacttctgaagattcaatttaaat 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gcagtggctttcactttgggcagaagtttggatggtgacttctgaagattcaatttaaat 500

                                                                       
Query: 301 tccaagatgctttagttttcatatctttaagaactgagcccgagaaaatatctgtgtact 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tccaagatgctttagttttcatatctttaagaactgagcctgagaaaatatctgtgtact 560

                                                                       
Query: 361 cactgtgtgtgatgtggacaaactgtagattcttcccggactccaagcatctagtctgtg 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 561 cactgtgtgtgatgtggacaaactgtagattcttcctggactccaagcatctagtctgta 620

                                                                    
Query: 421 aaatgagctcttgagtgctagatctataatacatacataccccttacatttgaatgg 477
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 aaatgagctcttgagtgctagatctataatacatacacaccccttacatttgaatgg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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