BAC Information

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BAC

Clone NameMSMg01-377K21
Chromosome6 (Build37)
Map Location 119,929,777 - 119,930,202
singlet/doubletsinglet
Overlap geneWnk1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, EG406236
Downstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K21.T7 (MSMg01no377_k21.b1)MSMg01-377K21.TJ (MSMg01no377_k21.g1)
ACCAG482704AG482705
length796803
length of high quality
(start - end)		430 (46 - 475)360 (76 - 435)
definitionCHROMAT_FILE: MSMg01no377_k21.b1 PHD_FILE: MSMg01no377_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:57 2005CHROMAT_FILE: MSMg01no377_k21.g1 PHD_FILE: MSMg01no377_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAACAGAGAAAGCTACACTGAGAAACCCTGTTTCAAATAACAA
TAATAATAATGTACAAGAATGTATAGTATAAAAGTAAAGTATATGGAATA
AATTCAAAGCTTTCCAAGCCTGAAAGTGACTTACAGGAGAGCTATTAGAC
ATTGAGTAACAAGGTTTTGAGATACTCGTGGGCTTTTTATTTTTAAGAAA
CTAATATATATTTGATCACTGACATTTTTAAAAAGTTGGTCTAGGTTATT
CTAAAACATAATTTTTAGCACCAGAAAGAACACATTAGTAATAACAAATG
TTCTTATATTAACTTCATCTTATTTCTTTTTAACATGTATACATCAAATA
GAGGCGAAGATTAACTTAAAAGTCTTATAACCCTGCAAAAGCAACCCCTC
TTCTTCCTTGTTAGCTTAATCACACGTGGTTCTGTTCCAACTAGTTAAAG
CAAATGTATTTTCTGAATAANGNTAAAAAATACCAAACCATTACTAAGAA
AAACTGGGTTACTGTTAAAGAAAAAAAACTTAAGTTTATTCTTTAAAGGG
ACCCCCTTTTTTCTTTCCCTCGTCCCAACCAGAAATTAACTCTAAAAAAT
CCTGGCCTTATTGTTGAATTGAGGGGAAAGGGCCCCAAAAAAAAATGGCC
CTCCCACTGGTAGAAAAATTAATTCCCCCCTTACCTTCTANAAAGGGTGG
GGACCTTGGGACCCCCTATATTTTTTGCGGCAAAAATTGTGCGTTT

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCTCCTCCTGGGGAACTGG
AGTTATAGGCATGTACTTCCATGTCTGACCTGACTATGACTTCTTAAAAA
AAAAAAAAAACTCGAAAACTATATANTATGCGCGCGTATGTCTATGTACC
AAGTACATGCTTGGTGTCCTCAGAAGCCAGAAGGGGGCATCAGATCCCCT
GGAACTGGAGTTACAGATGGTTATGAATCAACATGTGGATGTGTGGATGC
TAGGAAACGAACCTGAGTCCTCTGGAAGGGGCATGGAATGTGGGTCACAG
GATTGAACTCAGATCAGCTGGCTCAAGTGGCAAGAGCTTTTACCTGCTGA
TCTGTCTTGTCCCTCTTCAATACCCTTGCTGACTTGGNGCTATTGNGNTT
ATTTGTTTCTTCTTTCTTTGTTTCTTTCCTCCCCCCACCCCCNATTCCAC
CCAAAGAAAGGGTTTTTCTGTGTACCCCGGGTTGTCCTGTAACTTGTTCT
GTTAACAACCCTGCCTTTTAAACCGAAAAATCTTTTTCTTTGGTCCATCC
CACTTGGGGGATGGGGTCTTTTTATTTTTTTACGGCCCAAAAATTTTCCC
ATTTTTTTTCAAAACACTGAGGGGGTTTTACCTTTTAGAATAATTTCCCT
ATATCCCCCCCTTTTAACCCCACATACTACCTCTCTTCTCTTCCGCCCCT
TTTTTAATATCCCTCCCCATCTTTTTCCCCACTCGTTCTCACTCAAATTT
NAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k21.b1 MSMg01no377_k21.b1 CHROMAT_FILE:
MSMg01no377_k21.b1 PHD_FILE: MSMg01no377_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:57 2005
         (430 letters)



>mm_chr6_119929573_119930402
          Length = 830

 Score =  808 bits (418), Expect = 0.0
 Identities = 424/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaacagagaaagctacactgagaaaccctgtttcaaataacaataataataa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaacggagaaagctacactgagaaaccctgtttcaaataacaataataataa 264

                                                                       
Query: 65  tgtacaagaatgtatagtataaaagtaaagtatatggaataaattcaaagctttccaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtacaagaatgtatagtataaaagtaaagtatatggaataaattcaaagctttccaagc 324

                                                                       
Query: 125 ctgaaagtgacttacaggagagctattagacattgagtaacaaggttttgagatactcgt 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgaaagtgacttacaggaaagctattagacattgagtaacaaggttttgagatactcgt 384

                                                                       
Query: 185 gggctttttatttttaagaaactaatatatatttgatcactgacatttttaaaaagttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggctttttatttttaagaaactaatatatatttgatcactgacatttttaaaaagttgg 444

                                                                       
Query: 245 tctaggttattctaaaacataatttttagcaccagaaagaacacattagtaataacaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaggttattctaaaacataatttttagcaccagaaagaacacattagtaataacaaat 504

                                                                       
Query: 305 gttcttatattaacttcatcttatttctttttaacatgtatacatcaaatagaggcgaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttcttatattaacttcatcttatttctttttaacatgtatacatcaaatagaggcgaag 564

                                                                       
Query: 365 attaacttaaaagtcttataaccctgcaaaagcaacccctcttcttccttgttagcttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaacttaaaagtcttataaccctgcaaaagcaacccctcttcttccttgttagcttaa 624

                 
Query: 425 tcacac 430
           ||||||
Sbjct: 625 tcacac 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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