BAC Information

Click to search

BAC

Clone NameMSMg01-378B04
Chromosome6 (Build37)
Map Location 133,652,011 - 133,652,525
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649
Downstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378B04.T7 (MSMg01no378_b04.b1)MSMg01-378B04.TJ (MSMg01no378_b04.g1)
ACCAG483006AG483007
length756756
length of high quality
(start - end)		586 (49 - 634)516 (79 - 594)
definitionCHROMAT_FILE: MSMg01no378_b04.b1 PHD_FILE: MSMg01no378_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:28 2005CHROMAT_FILE: MSMg01no378_b04.g1 PHD_FILE: MSMg01no378_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTATTTTTAATTGCTGAGTAGTAATCCATTGTGTAAATGTA
TCACATTTTCTGTATCCATTCCTCTGTTGAGAGACATCTGGGTTCTTTCC
AGCAATGGCTATTATAAAAAGGCTGCTAAGAACATAGTGGTGCATGTGTC
CTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAGGAGAGGAATTG
CTGGATCTTCTGGTAGTACTATGTCTAATTTTCTGGGGAACTGCCAGACT
GATTTCCAAAGTAGTTGTACCAGACTGCAATCCCACCAACAATGGAGGAG
TGTCCTCATTTCTTCACATCCTTGTCATCATCTGCTGTCAACTGATTTTT
TTAATTTATGTATTTTTATTAGATACTTTCTTTATATACATTTCAAATGC
TATCCGGAAAGTTCCATATACCCTCCCACTGCCCTGGTCCCCTACCCACC
TACTTCTGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGCATATCAAGT
TTGAAATACCAAGGGGCCTCTCTTCCCAGTGATGGATGACTAGGCCATCT
TCTGCTACATATGCAGATAGAAATATAAACTCTGGGGGTACCAGTTAGTA
AACACTGTTGTTCTACCTATAAATTTGCAGACCCCCTTCGCTCCTTGGGT
GCTTTCTCTAGCTTCTCCCTGGGGGCCCCGTGTTTCCTCCTATAAATGAC
TGTGAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGACATAAGAACAAAGAAT
GATTGCTTCTATACTTCTATAAATGTAGTCAATGCAAAGAGTAAACATTG
TTACAAAGTAAGGTAATAAAAATAAATTTTATAAAAGGGAGCAATGGAGC
ATAAAGTTGCTGTGGAGTTATGTGCCTCAGGGGCACAAGTACATTGGAGA
TCTTGTGCAATATCAGCTTAGACCATCAAAGCCATGCCACCTTGTACTGT
CTGAATGCTAAGACTTGAAATGAGGCTGAGGCTTATGCAATGTGCATTTG
CTGACAACAAGCAAATTTTCACACTATGAATTGACAAATACCAAGGCAAG
GTCTTTATATTTATTAAATTTGACTCAATGATCTTACCTAATTTATTTAA
TTCCATGGTACAAAAGGGAGTGGAACAAATTTTATTTCTTTTCTTATCAT
TTTCAAGATAAGAGAAATGATTTTATCTGCTCTACTGGCTCTAGACTGTT
CAGAGCCAGCCTGAGACGTAGGAAGATTCTTCTGTGGGGGTAGNTCTTCT
GACTTTTCAGGAGAGGAGGGAAGTTCCTTTTTAACATCTTCTACACTTTC
CTCCCCAGATTGATTTCCCTGTTCTTTCACGCATAATCCGAAGGCCCCCT
AACCTTTTGAATGTTGTATTTCCGAACCTTTTGTTTGCTGTCCTGTCTCC
TCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_b04.g1 MSMg01no378_b04.g1 CHROMAT_FILE:
MSMg01no378_b04.g1 PHD_FILE: MSMg01no378_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:28 2005
         (516 letters)



>mm_chr6_133651703_133652618
          Length = 916

 Score =  980 bits (507), Expect = 0.0
 Identities = 513/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggacataagaacaaagaatgattgcttctatacttctataaatgtagtcaatgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 agaggacataagaacaaagaatgattgcttctatacttctataaatgtagtcaatgcaaa 764

                                                                       
Query: 61  gagtaaacattgttacaaagtaaggtaataaaaataaattttataaaagggagcaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gagtaaacattgttacaaagtaaggtaataaaaataaattttataaaagggagcaatgga 704

                                                                       
Query: 121 gcataaagttgctgtggagttatgtgcctcaggggcacaagtacattggagatcttgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcataaagttgctgtggagttatgtgcctcaggggcacaagtacattggagatcttgtgc 644

                                                                       
Query: 181 aatatcagcttagaccatcaaagccatgccaccttgtactgtctgaatgctaagacttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatatcagcttagaccatcaaagccatgccaccttgtactgtctgaatgctaagacttga 584

                                                                       
Query: 241 aatgaggctgaggcttatgcaatgtgcatttgctgacaacaagcaaattttcacactatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aatgaggctgaggcttatgcaatgtgcatttgctgacaacaagcaaattttcacactatg 524

                                                                       
Query: 301 aattgacaaataccaaggcaaggtctttatatttattaaatttgactcaatgatcttacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 523 aattgacaaataccaaggcaaggtctttatatttattaaatttgactcattgatcttacc 464

                                                                       
Query: 361 taatttatttaattccatggtacaaaagggagtggaacaaattttatttcttttcttatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taatttatttaattccatggtacaaaagggagtggaacaaattttatttcttttcttatc 404

                                                                       
Query: 421 attttcaagataagagaaatgattttatctgctctactggctctagactgttcagagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 attttcaagataagagaaatgattttatctgctctactggctctagactgttcagagcca 344

                                              
Query: 481 gcctgagacgtaggaagattcttctgtgggggtag 515
            ||||||||||||||||||||||||||||||||||
Sbjct: 343 tcctgagacgtaggaagattcttctgtgggggtag 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |