Query= MSMg01no378_d17.b1 MSMg01no378_d17.b1 CHROMAT_FILE:
MSMg01no378_d17.b1 PHD_FILE: MSMg01no378_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:40 2005
(522 letters)
>mm_chr6_133966996_133967909
Length = 914
Score = 920 bits (476), Expect = 0.0
Identities = 501/518 (96%), Gaps = 16/518 (3%)
Strand = Plus / Plus
Query: 5 gaattctacctattgcacatctgaagagttctctctatctctgtctctgtctctctttgt 64
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 gaattctacctattgcacatctgaagagttc------tctctgtctctgtctctctttgt 264
Query: 65 ctctctgtgtgagtatactggttttgaacttgccctgtctctgtctctctgtctctctca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctctgtgtgagtatactggttttgaacttgccctgtctctgtctctctgtctctctc- 323
Query: 125 ctctgtgtgtgtgtgtgtacctttttttgaacttgctatacagccaaaagtgaccttaaa 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 -------tgtgtgtgtgtacctttttttgaacttgctatacagccaaaagtgaccttaaa 376
Query: 185 tttatgatcatcctgcctctacctctcaagtagcaaaggcataggcataggcataggcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttatgatcatcctgcctctacctctcaagtagcaaaggcataggcataggcataggcat 436
Query: 245 gtggctatgtatttctgtgactcaaacccaatgactcctgggtgctagctaaccaagcta 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 gtggctatgtatttctgtgactcaaacccaaggactcctgggtgctagctaaccaagcta 496
Query: 305 tatccttagcctcccatccttgtatatctgggaagaattaaatatgtttgatcgggaggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatccttagcctcccatccttgtatatctgggaagaattaaatatgtttgatcgggaggg 556
Query: 365 aaaaggggtgtgtgtgtgtgtgtgtgtgtgatcaaaatgggttgatattagaagcaataa 424
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 aaaaggggtgtgtgtgtgtgtgtgtgtg--atcaaaatgggttgatattagaagcaataa 614
Query: 425 gccacccagtactgtagaaaagaaccttaacaattagtgtatcatgtaaaaattacagac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gccacccagtactgtagaaaagaaccttaacaattagtgtatcatgtaaaaattacagac 674
Query: 485 gcttatcctaaatagtagtgagcttgagtgttctagaa 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcttatcctaaatagtagtgagcttgagtgttctagaa 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 914
Length adjustment: 10
Effective length of query: 512
Effective length of database: 904
Effective search space: 462848
Effective search space used: 462848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_d17.g1 MSMg01no378_d17.g1 CHROMAT_FILE:
MSMg01no378_d17.g1 PHD_FILE: MSMg01no378_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:40 2005
(557 letters)
>mm_chr6_134122420_134123379
Length = 960
Score = 1052 bits (544), Expect = 0.0
Identities = 555/560 (99%), Gaps = 3/560 (0%)
Strand = Plus / Minus
Query: 1 ttttaggattcttaaatatatcagggaatagctggggacactgccccaatggtggttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ttttaggattcttaaatatatcagggaatagctggggacactgccccaatggtggttgca 701
Query: 61 atgtgtgagcctcgagttaaattcataaaataatctttggtctgatgaggctaaatctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atgtgtgagcctcgagttaaattcataaaataatctttggtctgatgaggctaaatctgt 641
Query: 121 aaataccctggcttttattttagaattatggcagccatgtgagttgcttttcaaccattc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 640 aaataccctggcttttattttagaattatggcagccatatgagttgcttttcaaccattc 581
Query: 181 catacttaacagaagtcctgataaacctcgtagttcataagtatttaattaggtagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 catacttaacagaagtcctgataaacctcgtagttcataagtatttaattaggtagaagt 521
Query: 241 agaacaacaaattaagttcgtctatttaataaatataaagttttcagtaaagaaaacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agaacaacaaattaagttcgtctatttaataaatataaagttttcagtaaagaaaacact 461
Query: 301 gcaaaacatgggatacaggcttggaaactataataaaaaaccaagggcttggtacaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcaaaacatgggatacaggcttggaaactataataaaaaaccaagggcttggtacaaaaa 401
Query: 361 ggccagaaatgacagcctcatattaacttcctctaagaaagtcacacttggtgtagacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggccagaaatgacagcctcatattaacttcctctaagaaagtcacacttggtgtagacca 341
Query: 421 aagcataaagtttggaataacaagaagacaaacaaaactgcttatctccttaaaaataaa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 340 aagcataaagtttggaataacaagaagacaaacaaaactgcatatctccttaaaaataaa 281
Query: 481 caagaactaatagaacat---aaaaaaaaaatctagaaacgtacgtagcctgtcctcaca 537
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 280 caagaactaatagaacataaaaaaaaaaaaatctagaaacgtacgtagcctgtcctcaca 221
Query: 538 tctctagaatagctttctgg 557
||||||||||||||||||||
Sbjct: 220 tctctagaatagctttctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 960
Length adjustment: 10
Effective length of query: 547
Effective length of database: 950
Effective search space: 519650
Effective search space used: 519650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
