Query= MSMg01no378_h01.b1 MSMg01no378_h01.b1 CHROMAT_FILE:
MSMg01no378_h01.b1 PHD_FILE: MSMg01no378_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:56 2005
(597 letters)
>mm_chr6_101787278_101788275
Length = 998
Score = 1011 bits (523), Expect = 0.0
Identities = 558/575 (97%), Gaps = 13/575 (2%)
Strand = Plus / Minus
Query: 35 tctctgaacctctcctccttccctatatgaaaggtgatatcccctggattctaaaatctt 94
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 998 tctctgaacctctcctccttccctatatgaaaggtgatatcccctgaattctaaaatctt 939
Query: 95 ttgaagtcatccttttttatctttgtcaagggatatgcctccaagataactgaaaatcac 154
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 938 ttgaagtcatccttttttatctttgtcaagggatatgcctccaggataactgaaaatcac 879
Query: 155 aaatacaacacatataggatacttgctttattgt----gagagacagagagacacagac- 209
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 878 aaatacaacacatataggatacttgctttattgtgagagagagacagagagacagagaca 819
Query: 210 -----agagacagagagagatattgtattaaagtttaattctaacaatttgaaagaaaat 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gagagagagacagagagagatattgtattaaagtttaattctaacaatttgaaagaaaat 759
Query: 265 tacaataatgaact-aaaaatcagctttcaatgctacacagagaaattcctgggacaatg 323
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tacaataatgaactaaaaaatcagctttcaatgctacacagagaaattcctgggacaatg 699
Query: 324 caaacaggcgaccttgtgccccttcaaacaagtagagaggtgaagatgtttcttatttat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caaacaggcgaccttgtgccccttcaaacaagtagagaggtgaagatgtttcttatttat 639
Query: 384 tttgtcattcaatttcccttccatctcctggcctgaagccacagaagcttcaagcctctt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttgtcattcaatttcccttccatctcctggcctgaagccacagaagcttcaagcctctt 579
Query: 444 ggcaggacaatcagaattctctttctttgctcattattttttttccccccactggcagcg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggcaggacaatcagaattctctttctttgctcattattttttttccccccactggcagcg 519
Query: 504 ttcccaaacctagcagcctgataaaagttctgcttcaccagtggccccctcactgcctct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttcccaaacctagcagcctgataaaagttctgcttcaccagtggccccctcactgcctct 459
Query: 564 gagacatctccagaggggttt-ggaaagcttctat 597
||||||||||||||||||||| || | ||||||||
Sbjct: 458 gagacatctccagaggggtttaggca-gcttctat 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space: 579956
Effective search space used: 579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_h01.g1 MSMg01no378_h01.g1 CHROMAT_FILE:
MSMg01no378_h01.g1 PHD_FILE: MSMg01no378_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:56 2005
(574 letters)
>mm_chr6_101634809_101635782
Length = 974
Score = 1094 bits (566), Expect = 0.0
Identities = 572/574 (99%)
Strand = Plus / Plus
Query: 1 acgatgggcagcatggcccttcttgcaaagactgtgcactgtgttagtcactcagggatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgatgggcagcatggcccttcttgcaaagactgtgcactgtgttagtcactcagggatc 260
Query: 61 atcctttggtgaattaaattaaaatggactcagttgtcagaaactattgaataatgtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctttggtgaattaaattaaaatggactcagttgtcagaaactattgaataatgtgga 320
Query: 121 attctgtatatttaaaatattaccttttattatgcatatctacttcaaaaccaaatagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctgtatatttaaaatattaccttttattatgcatatctacttcaaaaccaaatagct 380
Query: 181 gtgttccataaacaaatatgttttagagtacaagtgttcttttttttttaatggaatgaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtgttccataaacaaatatgttttagagtacaagtattcttttttttttaatggaatgaa 440
Query: 241 aatgggtctataaagcatttatgacaaagttcagaaattaaggttaatataaagaggttg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgagtctataaagcatttatgacaaagttcagaaattaaggttaatataaagaggttg 500
Query: 301 agagcaatcatcaggtaagttaaaatttagcataggagatgaaagacaaagatggggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagcaatcatcaggtaagttaaaatttagcataggagatgaaagacaaagatggggaaa 560
Query: 361 taaaatgaagagagatgtggggcagaaagggattcagaaggaacattaacacttcgtgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaatgaagagagatgtggggcagaaagggattcagaaggaacattaacacttcgtgta 620
Query: 421 ataaagaggaataaaggaggatgcccgcgcatcctgcagtggtcgtaactgacagaggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaagaggaataaaggaggatgcccgcgcatcctgcagtggtcgtaactgacagaggct 680
Query: 481 cttcagttcacactagagaaaactgataataaataaacgtcagtcagcagatctgtgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcagttcacactagagaaaactgataataaataaacgtcagtcagcagatctgtgggt 740
Query: 541 gttctggacttttaaaagatccataaatcaagtg 574
||||||||||||||||||||||||||||||||||
Sbjct: 741 gttctggacttttaaaagatccataaatcaagtg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
