Query= MSMg01no378_j07.b1 MSMg01no378_j07.b1 CHROMAT_FILE:
MSMg01no378_j07.b1 PHD_FILE: MSMg01no378_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:06 2005
(527 letters)
>mm_chr6_76968438_76969364
Length = 927
Score = 909 bits (470), Expect = 0.0
Identities = 490/498 (98%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 33 agtctaacttcttgagttctttgtatatattggatattagccctctatcggatttaggat 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 agtctaacttcttgagttctttgtatatattggatattagccctctatcggatttaggat 868
Query: 93 tggtaaagatcttttcccaacctattggttgcctttttttttt---aattgacagagtcc 149
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 867 tggtaaagatcttttcccaacctattggttgccttttttttttttaaattgacagagtcc 808
Query: 150 tttgccttacagaagctttgcaaattttatgaggtcccatttgtcaattcttgatcttat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tttgccttacagaagctttgcaaattttatgaggtcccatttgtcaattcttgatcttat 748
Query: 210 agcacaagccattggtgttcatcctctcatctttatttaataaattccttggtgtactta 269
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 747 agcacaagccattggtgttcatcctttcatctttatttaataaattccttggtgtactta 688
Query: 270 ataattccttggtgtacttaataattttgagtatttagttttatatgtagtcatttgttc 329
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agaattccttggtgtacttaataattttgagtatttagttttatatgtagtcatttgttc 628
Query: 330 ctttttaccaaagccccactcattgcaaaaacattcactataaatatgttgttggccata 389
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctttttaccaaagcccaactcattgcaaaaacattcactataaatatgttgttggccata 568
Query: 390 acttgtggagatgtccttctacttacctcagtaagtttctctcattttagattaccctat 449
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 567 acttgtggagatgtccttctacttacctcagaaagtttctctcattttagattaccctat 508
Query: 450 tgcttcttattgaattgtttttcatttgaaatgttattctcttgtctaaacttattattg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgcttcttattgaattgtttttcatttgaaatgttattctcttgtctaaacttattattg 448
Query: 510 gttacttctcctaactag 527
||||| ||||||||||||
Sbjct: 447 gttacctctcctaactag 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_j07.g1 MSMg01no378_j07.g1 CHROMAT_FILE:
MSMg01no378_j07.g1 PHD_FILE: MSMg01no378_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:06 2005
(503 letters)
>mm_chr6_76835006_76835908
Length = 903
Score = 911 bits (471), Expect = 0.0
Identities = 495/503 (98%)
Strand = Plus / Plus
Query: 1 cacattttcagtttttcccattatccctccagtgggtgtagaaaaggcagcaacatgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacattttcagtttttcccattatccctccagtgggtgtagaaaaggcagcaacatgttg 260
Query: 61 ggccaattagaacacatctgtcttgattactatgcaacctgaaaagatctttctcccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggccaattagaacacatctgtcttgattactatgcaacctgaaaagatcgttctcccatg 320
Query: 121 cctctcaatgggaactatgatcatttccgcatcaggtttccaggttttaagagtgagtgg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cctctcaatgggaactatgatcatttccgcatcaggttttcaggttttaagagtgagtgg 380
Query: 181 tacatattcacaaagttaattaattgtgtagaatagaaagtgaagttatatgccagtgat 240
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tacatattcataaagttaattaattgggtagaatagaaagtgaagttatatgccagtgat 440
Query: 241 aatattgctttggggggttatgatagaattagtagactgagacacgatatgtctattata 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aatattgctttggggggttatgatagaattagtagactgagacacgatgtgtctattata 500
Query: 301 atatcaaatgactcttgaagaatgaatactggggaatagaatggatctgaataaaaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcaaatgactcttgaagaatgaatactggggaatagaatggatctgaataaaaagat 560
Query: 361 acaagtagtttggagattactgccatagatcccatttctagatagcttcagcaaagctag 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 acaagtagtttggagattactgccatagatcccatttctagattgcttcagcaaagctag 620
Query: 421 gagagagcctgcctcatcttcaaaactcattttgtctcccagcctgacacaggaatcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagagcctgcctcatcttcaaaactcattttgtctcccagcctgacacaggaatcctg 680
Query: 481 tgagataacctcatatattgttg 503
|||||| || |||||||||||||
Sbjct: 681 tgagatgacttcatatattgttg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
