Query= MSMg01no379_i02.b1 MSMg01no379_i02.b1 CHROMAT_FILE:
MSMg01no379_i02.b1 PHD_FILE: MSMg01no379_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
(223 letters)
>mm_chr6_18865406_18866023
Length = 618
Score = 340 bits (176), Expect = 3e-98
Identities = 209/222 (94%), Gaps = 5/222 (2%)
Strand = Plus / Plus
Query: 1 aatttcttaagggggaatatgttaggttaaataaatagaaatgattacacacttagcttg 60
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||
Sbjct: 201 aatttcttaagggggaatatgttaggt----taaatagaaattattacacacttag-ttg 255
Query: 61 ctcatgtaggtgttttatgtgaatacattttcatatgcaaagttattgttcaaatggcat 120
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 256 ctcatgtaggtgttttatgcgaatacatttttatatgcaaaattattgttcaaatggcat 315
Query: 121 cagggaacaatttcaaatgaattaataggttttaaaaattagtttgggaaggtggacatt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 cagggaacaatttcaaatgaattaataggttttaaaaattagtttggaaaggtggacatt 375
Query: 181 tgaaaattttaacgtaaatcaaaataaagtgttaaaatttaa 222
||||| |||||| ||||||||||||||||| |||||||||||
Sbjct: 376 tgaaagttttaatgtaaatcaaaataaagttttaaaatttaa 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 618
Length adjustment: 9
Effective length of query: 214
Effective length of database: 609
Effective search space: 130326
Effective search space used: 130326
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no379_i02.g1 MSMg01no379_i02.g1 CHROMAT_FILE:
MSMg01no379_i02.g1 PHD_FILE: MSMg01no379_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
(511 letters)
>mm_chr6_18993779_18994689
Length = 911
Score = 911 bits (471), Expect = 0.0
Identities = 498/507 (98%)
Strand = Plus / Minus
Query: 1 acagagggattgggtcacagactacaaagccctctcagggctaacttcccttgtcaattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 707 acagagggattgggtcacagactacaaagccctctcagggctaacttcccttctcaattt 648
Query: 61 tggaagcattcaaagaggctgtatcttccctattctggcctagcaaataggcacataccc 120
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 647 tggaagcattcaaagaggctgtatcctccctattctggcctaacaaataggcacataccc 588
Query: 121 tcttctctccctactcttctctgctccatgggttttcccccattaattccctagcttttt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcttctctccctactcttctttgctccatgggttttcccccattaattccctagcttttt 528
Query: 181 agtgtttcttccatatgagataattacctatttgcaaaacacagacctattttgtcagat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 527 agtgtttcttccatatgagataattacctatttgcaaaacacagaactattttgtcagat 468
Query: 241 gaataacttagtctgttttataaaatcctctgccagaaataaagtcacaaatgtctaatt 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 467 gaataacttagtctgttttataaaatcctctgccagaaatatagtcacaaatgtccaatt 408
Query: 301 ttaaagcttaagtggtttttctgagccatgtttcccctcctaataagttaaataaatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttaaagcttaagtggtttttctgagccatgtttcccctcctaataagttaaataaatgtt 348
Query: 361 gacttttgttcctgacagattgttcacctataagatctcacaatagtgatttagatgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 347 gacttttgttcctgacagattgttcacctataagatctcacaatagtgacttagatgctt 288
Query: 421 aaaaattttgtggaaaataagtaccaagagatatgactatcacatactcttttcctagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaaaattttgtggaaaataagtaccaagagatatgactatcacatactcttttcctagat 228
Query: 481 cattaagtaaatgtacatttgtatctc 507
|||||||||||||| ||||||||||||
Sbjct: 227 cattaagtaaatgtgcatttgtatctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
