BAC Information

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BAC

Clone NameMSMg01-380D24
Chromosome6 (Build37)
Map Location 61,954,317 - 61,954,802
singlet/doubletsinglet
Overlap geneC130092O11Rik
Upstream geneLOC100041756, LOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D24.T7 (MSMg01no380_d24.b1)MSMg01-380D24.TJ (MSMg01no380_d24.g1)
ACCAG484671AG484672
length793761
length of high quality
(start - end)		36 (107 - 142)487 (75 - 561)
definitionCHROMAT_FILE: MSMg01no380_d24.b1 PHD_FILE: MSMg01no380_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:16 2005CHROMAT_FILE: MSMg01no380_d24.g1 PHD_FILE: MSMg01no380_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCCCCCCGCTAAACGACTCACTATATCCAGAAGAACCGCGGAAATCA
CTTAAATAAACCAAGCAGAAAAATACAGCTCCATGAGAAAAAAAAATANG
CTCAACATGAAGGCACATGTGTTGTGTTGTGTTGTGTTGTGACTTGATTT
GCATTGCTTCCCCCCACCAACACACACCCCCACAACCACCCCCATAACCC
ACCCCCCAAACCCACACACCCCCCCACCAAAAACACCCCCAACCACCACC
ACAACACCAAAAACCCCACACACCCAAACCCCCCACCCTACAAACAAAAC
AACACACAACCAATACCAAACACAAACCCCAAAACCCCCCCCCACCCCAA
CCAAACAAACCACCAAACCCCACCACACACCCCCCCACAACCACAACCAA
CACCCCAAAAACCCCCCCCCCCCACCCAAACCCATCCACACCACACCCCC
CCCACCAAAACAACCCCACAACACCCCCCACCACCCACCCCCCCCCACAA
CCCCCACCCACAAACCCCACAACCCCCCCCCCCCACAAACCCCCCCCCAC
ACACAAACACCACCCCCCCCCCACCCAACACCCCCCCCCCCCCATAAACA
CACCACCCCCCCACACACCCAACCCCCCCCCCACCCCACCCCCCACCCAA
ACCACCACCCCACCCCCCCCACACCCACCCACCAACACCACAAACAAAAC
AACACCTACCCCACACCACACCCCCACACAAAAACACACACCCCACCAAA
ACCCCCCACACCCACCCATACCACCCACACAACAAACCCACCA

ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATGGAGGTGCATGTACATGTTTC
ATATAATGCCTTCATCCTCAGGAAATGCCTCAGAAAACTTAATTTGGATG
AATTAACATGTGTGCAGTCCTGTTGAGATTTTTCAGCAACAGCAAAATAG
CATGTTTTGTGTGTATCTACAGAATATATGAATATAGAAACCAAAGAGTA
GTAATGGAAATCTAGATGTATTTTTTTGTCATTAACCATTCCCTTTTTCT
GAAGTAGTTTAAATGTCAAGTTGAGTCAAATACTTGGACACAGTAGCAAA
AGGTGCATGCTGTGGATTTTATCCACTGCAGCAGATAGCCACCCATTGGA
TGTGTAATTTTTGGATAAAACACTGAAAATATTGGAATTCATCGTTGAAA
ATTAAGATGATGATATAATGAATATGCCATTTTATCAATAAAAATATATT
AAGCAGTATATTCTTTCACACGATATAAGTGGATCCAGAATATCAGTATA
ACTGCAGATCCTTTCAAAGAGAACACAGTGTGTGCCACATTTTTATGAAG
ATAANAAACCACATATTATTTTTCACATTTCTGGAATGTCTCCCAATTTA
AATTGGCTTGTTGTTCTATTAANGAAAGGGATGTTGCTTTGTGCAAATGG
GCCCCATAACTATTAATAAAAAGGGGTTCCAAAGGGGACTAACGCCCAGG
TTATTAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d24.g1 MSMg01no380_d24.g1 CHROMAT_FILE:
MSMg01no380_d24.g1 PHD_FILE: MSMg01no380_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:16 2005
         (487 letters)



>mm_chr6_61954117_61955002
          Length = 886

 Score =  895 bits (463), Expect = 0.0
 Identities = 481/487 (98%), Gaps = 1/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatggaggtgcatgtacatgtttcatataatgccttcatcctcaggaaatgcctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatggaggtgcatgtacatgtttcatataatgccttcatcctcaggaaatgcctcaga 260

                                                                       
Query: 61  aaacttaatttggatgaattaacatgtgtgcagtcctgttgagatttttcagcaacagca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aaacttaatttggatgaattaacatgtgtgcagtcccgttgagatttttcagcaacagca 320

                                                                       
Query: 121 aaatagcatgttttgtgtgtatctacagaatatatgaatatagaaaccaaagagtagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagcatgttttgtgtgtatctacagaatatatgaatatagaaaccaaagagtagtaa 380

                                                                       
Query: 181 tggaaatctagatgtatttttttgtcattaaccattccctttttctgaagtagtttaaat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaatctagatgtatttttt-gtcattaaccattccctttttctgaagtagtttaaat 439

                                                                       
Query: 241 gtcaagttgagtcaaatacttggacacagtagcaaaaggtgcatgctgtggattttatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcaagttgagtcaaatacttggacacagtagcaaaaggtgcatgctgtggattttatcc 499

                                                                       
Query: 301 actgcagcagatagccacccattggatgtgtaatttttggataaaacactgaaaatattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actgcagcagatagccacccattggatgtgtaatttttggataaaacactgaaaatattg 559

                                                                       
Query: 361 gaattcatcgttgaaaattaagatgatgatataatgaatatgccattttatcaataaaaa 420
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcatcgttgaaaattaagatgacaatataatgaatatgccattttatcaataaaaa 619

                                                                       
Query: 421 tatattaagcagtatattctttcacacgatataagtggatccagaatatcagtataactg 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 620 tatattaagcagtatattctttcacacgatataagtgaatccagaatatcagtataactg 679

                  
Query: 481 cagatcc 487
            ||||||
Sbjct: 680 tagatcc 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space:   417852
Effective search space used:   417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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