Query= MSMg01no381_a05.b1 MSMg01no381_a05.b1 CHROMAT_FILE:
MSMg01no381_a05.b1 PHD_FILE: MSMg01no381_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:17 2005
(306 letters)
>mm_chr6_117282421_117283126
Length = 706
Score = 561 bits (290), Expect = e-164
Identities = 302/306 (98%)
Strand = Plus / Plus
Query: 1 gacaaccctctgctgtatctggcctgtaaatcattgaactttagacctatgtgaaattcc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gacaaccctctgctgtatctggcctgtaaatcattgaacttcagacctatgtgaaattcc 260
Query: 61 atctcacacgtttttaatgaagtcaaaataaatgccattactgaacagaagccaaagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctcacacgtttttaatgaagtcaaaataaatgccattactgaacagaagccaaagatc 320
Query: 121 acaagaggttagaagtgggacaggaacgccgccaacgctgtttgtttgccttctgatgca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 acaagaggttagaagtgggacaggaacgccgccaacgctgtttgtttgccttctgaagca 380
Query: 181 gccttcgtgtgaacagttccttaatgggagggcagggatggtcctcccttccctgtgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttcgtgtgaacagttccttaatgggagggcagggatggtcctcccttccctgtgggc 440
Query: 241 atctgctgctgattatacagcagtcagagtggctgtgtggtgcctaggaaacttgatacg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atctgctgctgattatacagcagtcagagtggctgtgtggtgcctaggaaacttgagaca 500
Query: 301 ataatg 306
||||||
Sbjct: 501 ataatg 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_a05.g1 MSMg01no381_a05.g1 CHROMAT_FILE:
MSMg01no381_a05.g1 PHD_FILE: MSMg01no381_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:17 2005
(644 letters)
>mm_chr6_117428836_117429876
Length = 1041
Score = 1139 bits (589), Expect = 0.0
Identities = 618/629 (98%), Gaps = 4/629 (0%)
Strand = Plus / Minus
Query: 1 ttagaagtactgtctggctggagaggaaaaccaggtggtggtaactgcttcaccatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttagaagtactgtctggctggagaggaaaaccaggtggtggtaactgcttcaccatgtgg 722
Query: 61 cactgaggggcaagacttggggaccagcatgaattaatcacaggcttttaggatgtcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cactgaggggcaagacttggggaccagcatgaattaatcacaggcttttaggatgtcatc 662
Query: 121 acatttcttgggtctggctttggtaaattccaaagtgaaagttaggaaaggccattttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acatttcttgggtctggctttggtaaattccaaagtgaaagttaggaaaggccattttgg 602
Query: 181 tttctgcattttctttttcaaacactggtgttgcaactgccaactgcctttgatgtcagc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 601 tttctgcattttctttttcaaacactggtgttgcaactgccgactgcctttgatgtcagc 542
Query: 241 ctttgtggagcaggaatctgccacacctgacagcatcttcttgggaatgggacatgtggg 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 541 ctttgtggagcaggaatctgccacacctgacagcatcttc---agaatgggacatgtggg 485
Query: 301 ccagagataggtctccaccagtgaatgagctcatgaacatgtagtgttctccttatggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccagagataggtctccaccagtgaatgagctcatgaacatgtagtgttctccttatggag 425
Query: 361 cagtgaaaatacatccctgtacaaggcactatgcctgagacagtccctcggagatccact 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagcgaaaatacatccctgtacaaggcactatgcctgagacagtccctcggagatccact 365
Query: 421 tggggtctgcaataggcattttccattaagacactctttctatctctctataaatcaaca 480
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 tggggtctgcaatcggcattttccattaagacactcgttctatctctctataaatcaaca 305
Query: 481 gtgctgtgagtaccacgtaccatgaatcacagtctctacctgaagtttgctgaatggtcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtgctgtgagtaccacgtaccatgaatcacagtctctacctgaagtttgctgaatggtcc 245
Query: 541 tacatgtgtgaagtaacaggattattatattccataatgcctcaacacacacacacacac 600
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 244 tacatgtgtgaagtaacaggattgttatattccataatgcctcaaaacacacacacacac 185
Query: 601 acacacacacacacacacacacacacaca 629
|||||||||||||||||||||||| ||||
Sbjct: 184 acacacacacacacacacacacac-caca 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 27
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1041
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1031
Effective search space: 653654
Effective search space used: 653654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
