BAC Information

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BAC

Clone NameMSMg01-382A08
Chromosome6 (Build37)
Map Location 131,934,198 - 131,934,772
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
Downstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382A08.T7 (MSMg01no382_a08.b1)MSMg01-382A08.TJ (MSMg01no382_a08.g1)
ACCAG486023AG486024
length757780
length of high quality
(start - end)		578 (31 - 608)523 (75 - 597)
definitionCHROMAT_FILE: MSMg01no382_a08.b1 PHD_FILE: MSMg01no382_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005CHROMAT_FILE: MSMg01no382_a08.g1 PHD_FILE: MSMg01no382_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAGAGAAT
ATTGAATGATAGAATCAGTTGATATCAATACAAATTATGTATTATCCAAG
AAAAGATCAAACATGGAAAATATATGTATAACAAACTAACAAACAAACAG
CATGAGAGAAAAACAGCCATCATTCCTTGTACCCTAAGAAGTGTCATGCA
AACAGAGTACCTTGTGTTCAAAATTAAGCATGAAAATAATGTTGGCTACA
TAACAATAACAATTGCATTAAAGGGCTAATTATAAGAATTGTCCTAGAAT
CAATGAGATATATCCAGAGAATTAAATTAGTTGAGAATACATAATATCAA
TAAAATATTTTCACTGAGAAAATGAGGCATAACAAGAATCATTATTTGAG
ATTAAATCCCCTGTATTAAATTTGATCCGAGAACAGCGTAAAAGGCAATG
GTAAAATAGTGCATGAATGAAAAACACAAAATACCTTTTTAAAAGTTGTA
TAGACCAGTCTAAACACTTGATTAATTGTGGCCAAATAACTCTGGTGACA
ATGAATAAAACTATTTAATGGAAGGAGTAACACTGACACAGTCTGATGGA
TTATCCTTGGAGTANGAGGAATTCTATGAGTATTCTGACNATATGAAACC
CATGTTGAATATAAATAGTAAGTTTTCACATTATTCCACAGTGAATCTTT
CATTATAGNTTTACTAGATACTTTTACTTTATAAATTTTAACATGGTTTG
AAAAAGG

NGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAGTGATAAGT
GGATATTAGCCCAAAACCTANGATACCCAAGATATAAGATACNATTTCCT
AAACACATGAAACTCAGGAAAATGAAGACTGGAGGGTGGACACTATGCCC
CCTCCTTAGAGTGGGGACAAAGCACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_a08.b1 MSMg01no382_a08.b1 CHROMAT_FILE:
MSMg01no382_a08.b1 PHD_FILE: MSMg01no382_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:37 2005
         (578 letters)



>mm_chr6_131933995_131934972
          Length = 978

 Score = 1019 bits (527), Expect = 0.0
 Identities = 563/575 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagagaatattgaatgatagaatcagttgatatcaatacaaattatgtatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagagaatattgaatgatagaatcagttgatatcaatacaaattatgtatt 263

                                                                       
Query: 64  atccaagaaaagatcaaacatggaaaatatatgtataacaaactaacaaacaaacagcat 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atccaagaaaagatcaaacagggaaaatatatgtataacaaactaacaaacaaacagcat 323

                                                                       
Query: 124 gagagaaaaacagccatcattccttgtaccctaagaagtgtcatgcaaacagagtacctt 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 324 gagagaaaaacagccatcattccttgtaccctaagaagagtcatgcaaacagaatacctt 383

                                                                       
Query: 184 gtgttcaaaattaagcatgaaaataatgttggctacataacaataacaattgcattaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgttcaaaattaagcatgaaaataatgttggctacataacaataacaattgcattaaag 443

                                                                       
Query: 244 ggctaattataagaattgtcctagaatcaatgagatatatccagagaattaaattagttg 303
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 444 ggctaattataagaattgtcctagaattaatgagatatatccagagaattaaattaattg 503

                                                                       
Query: 304 agaatacataatatcaataaaatattttcactgagaaaatgaggcataacaagaatcatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaatacataatatcaataaaatattttcactgagaaaatgaggcataacaagaatcatt 563

                                                                       
Query: 364 atttgagattaaatcccctgtattaaatttgatccgagaacagcgtaaaaggcaatggta 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 564 atttgagattaaatcccctgtattaaatttgatcagagaacagcgtaaaaggcgatggta 623

                                                                       
Query: 424 aaatagtgcatgaatgaaaaacacaaaatacctttttaaaagttgtatagaccagtctaa 483
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 624 aaatagtgcatgaatgaaaaacacgaaatacctttttaaaagttgtatagaccagtctga 683

                                                                       
Query: 484 acacttgattaattgtggccaaataactctggtgacaatgaataaaactatttaatggaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 acacttgattaattgtggccaaataactctggtgacaatgaataaaactgtttaatggaa 743

                                              
Query: 544 ggagtaacactgacacagtctgatggattatcctt 578
           | |||||||||||| ||||||||||||||||||||
Sbjct: 744 gcagtaacactgactcagtctgatggattatcctt 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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