Query= MSMg01no382_a24.b1 MSMg01no382_a24.b1 CHROMAT_FILE:
MSMg01no382_a24.b1 PHD_FILE: MSMg01no382_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:40 2005
(544 letters)
>mm_chr6_146033277_146034220
Length = 944
Score = 1036 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Plus
Query: 5 gaattcatccctctctgcttcctgacctgaaggctgttgtgtgagcaacagccttacatt 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccctctctgcttcctggcctgaaggctgttgtgtgagcaacagccttacatt 264
Query: 65 tctgccaccaggcctcattgccaaaccttcccagccatcaacctgattgggaacaacaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgccaccaggcctcattgccaaaccttcccagccatcaacctgattgggaacaacaag 324
Query: 125 gtgatgaaggaatgacagccacatgaacaggaaagctggggtcaggaggactgtactctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgatgaaggaatgacagccacatgaacaggaaagctggggtcaggaggactgtactctc 384
Query: 185 tgtgatggagctgtgctgactctgatggagtgtgtctgcactcagactagaaggttttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgatggagctgtgctgactctgatggagtgtgtctgcactcagactagaaggttttgc 444
Query: 245 cagttccatgcctgacccatatgggtaaggctttgccaacttcccatggctctgaggtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttccatgcctgacccatatgggtaaggctttgccaacttcccatggctctgaggtct 504
Query: 305 tggtctttgaaatagctcctgtcagataatacacacacactcagaacttcactctctcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtctttgaaatagctcctgtcagataatacacacacactcagaacttcactctctcag 564
Query: 365 ggtctccttggctcccccacatctttgtcagacctctcaaacagctcgattccctgcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtctccttggctcccccacatctttgtcagacctctcaaacagctcgattccctgcaga 624
Query: 425 tagctccttttcttctggcccaccgctcactctgtctagactctaaccccatatgtggcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagctccttttcttctggcccaccgctcactctgtctagactctaaccccatatgtggcc 684
Query: 485 acaggccccctcacagctccctgaggtaaaagtctggaatcacttcacagcctacctctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaggccccctcacagctccctgaggtaaaagtctggaatcacttcacagcctacctctt 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_a24.g1 MSMg01no382_a24.g1 CHROMAT_FILE:
MSMg01no382_a24.g1 PHD_FILE: MSMg01no382_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:41 2005
(519 letters)
>mm_chr6_146207575_146208493
Length = 919
Score = 791 bits (409), Expect = 0.0
Identities = 493/521 (94%), Gaps = 4/521 (0%)
Strand = Plus / Minus
Query: 1 agtggcacatacattgcgtctatacacacagggatgtctgtaaatatccagatatttttg 60
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agtggcgcatacgttgcgtctgtacacacagggatgtctgtaaatatccagatatttttg 660
Query: 61 ttcttgatcactgccagaattttgtttcagttttacatattttatttcatgagatgaatg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 659 ttcttgatcactgccagaattttgtttcagtttttcatattttatttcatgagattaatg 600
Query: 121 tgaattattttctaattttcttctgatctgaagcattcaaatagctgggctgagctcttt 180
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 599 tgaattattttctaattttcttctgatctgaaccattcaaatagctggggtgagctcttt 540
Query: 181 gaaattttgctggacctttcctgtgaattccctggcttggagttctgaggtcctccctag 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 539 gtaattttgctggacctttcctgtgaattctctggcttggagttctgaggtcctccctag 480
Query: 241 acagttacttctgtagaaatcctgctcagccattttctgtcttacttggatttgattttg 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 479 acagttacttctgtagaaatcctgctcggccattttctgtcttacttggatttgattttg 420
Query: 301 gcagattatgctcttcttcaaaactcccacattttattccagcatgttgagaattgttct 360
||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 419 acagattatgctcttcttcaaaactctcacattttattctggtatgttgagaattgttct 360
Query: 361 ccaatttttttgtttttgtccttttcgtaatgttttatctagagtcttagccttttctaa 420
|||||| ||| | |||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 359 ccaattcttta-tctttgtccttttcataacattttatctagagtcttaaccttttctaa 301
Query: 421 aactagatttgtctcttcctgctttcgaaggacgagtttctggaacttctcatcgccac- 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 300 aactagatttgtctctccctgctttcgaaggacgagtttctggaacttctcatagcc-cg 242
Query: 480 a-tttcctgccttccagcaccgcacccgcttctcctcggaa 519
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtttcctgccttccagcaccgcacccgcttctcctcggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
