Query= MSMg01no382_b09.b1 MSMg01no382_b09.b1 CHROMAT_FILE:
MSMg01no382_b09.b1 PHD_FILE: MSMg01no382_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:42 2005
(539 letters)
>mm_chr6_72803940_72804878
Length = 939
Score = 984 bits (509), Expect = 0.0
Identities = 521/525 (99%)
Strand = Plus / Plus
Query: 11 gaattctttaacttctccgaatgaacatttacatacatcaaatatgtttgttctaggcac 70
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctttaacttcagcgaatgaacatttacatacatcaaatatgtttgttctaggcac 270
Query: 71 tgtggtgcacacctttaattctagcatatgagaggcaaaggcaggtagatttatttctat 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtggtgcacacctttaattctagcatatgagaggcaaaggcaggtagatttatttctat 330
Query: 131 gagttctaggccagtcagagctgcctcaaaaagaaaaacaacaacaaactccaccaccta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagttctaggccagtcagagctgcctcaaaaagaaaaacaacaacaaactccaccaccta 390
Query: 191 caatcccaaacaccctccccaccccacccactcccctccagtaagaatccaatgctctct 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 caatcccaaacaccctccccaccccacccactcccctccagtaagaatccaatgctctct 450
Query: 251 tcgggcctccacggacactgctctcaagaatttgcatctgatgactcatagttcagaggc 310
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcggacctccacggacactgctctcaagaatttgcatctgatgactcatagttcagaggc 510
Query: 311 cacaagaaaggactgttttctttttgggcgtggcaaatgctcaagtagatagatgtgctc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cacaagaaaggactgttttctttttgggcgtggcaaatgctcaagtagatagatgtgctc 570
Query: 371 aaccacaagttaaacgctacgcattgtctatggatatggaagatatggaagcatcacagg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaccacaagttaaacgctacgcattgtctatggatatggaagatatggaagcatcacagg 630
Query: 431 gcactctcagggccaaagcaaactccaattccctaactccaaaggcagtccatatagcca 490
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 631 gcactctcagggccaaagcaaactccaattccctaactccaaaggcagtccaaatagcca 690
Query: 491 gaaatgataatagctcaatctagactacaggaggacttctgatgg 535
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaaatgataatagctcaatctagactacaggaggacttctgatgg 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_b09.g1 MSMg01no382_b09.g1 CHROMAT_FILE:
MSMg01no382_b09.g1 PHD_FILE: MSMg01no382_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:43 2005
(441 letters)
>mm_chr6_72959741_72960577
Length = 837
Score = 741 bits (383), Expect = 0.0
Identities = 395/401 (98%), Gaps = 4/401 (0%)
Strand = Plus / Minus
Query: 1 caggccgctaggaggattccaaccactagggggcagtctcctagagcagctgtggagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 568 caggccgctaggaggattccaaccactagggggcagtctcctagagcagctgtagagccc 509
Query: 61 atccgcctcaagttgggctctccttcccaaaccagcaccagtcagggctgacctcagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atccgcctcaagttgggctctccttcccaaaccagcaccagtcagggctgacctcagctt 449
Query: 121 tgagctacagggttgcagaacctggcaggacagttactaacggctctgtggaataaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgagctacagggttgcagaacctggcaggacagttactaacggctctgtggaataaaagg 389
Query: 181 gggaaagcagatgaaagaaaagccaagaaggaaaaaaaaaaaaaacctcaaccaggcaaa 240
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 388 gggaaggcagatgaaagaaaagccaagaagg----aaaaaaaaaacctcaaccaggcaaa 333
Query: 241 aaataaatcaggaagttcctcacatggcaaataaagagaaatggccactttctgaatctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaataaatcaggaagttcctcacatggcaaataaagagaaatggccactttctgaatctg 273
Query: 301 agacacgcacacatgaatatgcacatttaaaaaaaaattcagccaaaagaacttagaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agacacgcacacatgaatatgcacatttaaaaaaaaattcagccaaaagaacttagaatt 213
Query: 361 tattttttattcgtgtgcgtgtgtgtgtgtgtgtgtgtgtg 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tattttttattcgtgtgcgtgtgtgtgtgtgtgtgtgtgtg 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 837
Length adjustment: 9
Effective length of query: 432
Effective length of database: 828
Effective search space: 357696
Effective search space used: 357696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
