BAC Information

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BAC

Clone NameMSMg01-382F24
Chromosome6 (Build37)
Map Location 41,236,422 - 41,397,663
singlet/doubletdoublet
Overlap geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333
Downstream genePrss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F24.T7 (MSMg01no382_f24.b1)MSMg01-382F24.TJ (MSMg01no382_f24.g1)
ACCAG486293AG486294
length771774
length of high quality
(start - end)
484 (63 - 546)474 (66 - 539)
definitionCHROMAT_FILE: MSMg01no382_f24.b1 PHD_FILE: MSMg01no382_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:06 2005CHROMAT_FILE: MSMg01no382_f24.g1 PHD_FILE: MSMg01no382_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(41,236,422 - 41,236,905)(41,397,190 - 41,397,663)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGCA
AGGCTGTTTTTCAAATGAAGCTTTAATTGATCATATGTCCTGGAATCACA
GTTCTCTACTTTAGCACCCCTCACACACAACTTGTTGTAGCAAAAATCTG
AGTCCTCCTCTCTCAGTAGAGTTCAGGATTTAGTTGCACTTACATATTAC
ACTTAGCTTATCTCATTGGCCTGACAGTACTTTTCACATAGAAGGATGCT
TCTCTTCATTGGAGAACAAGTATCAACCAGATTCCTATGACCATACTGAT
TCTCAGGATGTATTTATTAGCTATAGAAAATGGGGGACATTTGAGATTTA
AAATTTTTTAAAAGTTTTCTTAGCTGATCTCCAGATGAGAGGTTTCACTA
GATGCCATCTCCCAAGGTTATGCTCCAACATATATGAGCAACCTGTGCAT
TGCCAATAAATTACTATTATCACCTACAGGTTTTGTGGTATATAGACCTG
TCTTGGTGGTCTGATTTTATTATCAACTTANGAAAGAATAATGAAGCCTT
TTTAAAGTGAGAACCCTAAACTTCTATTTGGGAGAGTTCACCTTGGAGGC
ACTCCATTCCTTTTTCCACGATAGAAACAAAATTTCCTTAAGAAAAGTTG
ATTTATTACAGGTACTTCTCTTTCCTTTGGCTTATTTTAAAAGGGGAGGA
ATTAATATTTCTACTTTAAGAAAATTTAACTTGGGAATATTGTATCCCCT
CCGGTGGGTAAAATAAAAAGG
GGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCTGTCACCTGCACCCACTCCCACATGCTCCAAT
AATTTCCATATCTTCCTATGGCCTTGAGGCAGCATGCCAGTTTTAGATAA
TTTCTCAGGTAAAGAGGAACCCATCAAAAATCAATCCTTTCTGAATCTCA
CACTAACATGATTGTGAAAAATGAAAGTATGTGAACCATCTGAAAAACCT
GACAGAGATGGCAATATGACAGACCTTCCATTTAGGAATGATCCCAGGAG
CAAGTAAATGAAAAACACCATGGAGAGATGGCAACTCTGAGTGGCTGTTC
AGAGATGTGAAGCTCACATAGTCATGCCAGTAATATGACCATCAAGTGTC
CCATGAGGCCCATTTTCTTTTTGCAGTTTCTTCTGATTTCCAATTTCTTC
AGCCTCCAATCAGTTTGCCTCCCCAATTGCCACAATTTTATCTAAACTTC
TTTCATTAACAGACAGCTCCAGAACCATCACAATTTTTCAAGGAACTCAA
AGATGATCTCATCTCCAATGCACCTTTTTCTATATCTGGGGGTCAATGGA
GATAAAAGCATCAGATAGAAAGGATCCTCCAATTGAGGGTTATAAAAAAG
CACAACTGACCCTCCNGCAGGAAGGGCCTTCAAAAGGGTTGGGCAAACCA
AAATGGGACCCGAACCTTTGGATGATTTTAATGAGAAAAAAAAACCCCGG
ATTTTTCCAAAAAATATACCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f24.b1 MSMg01no382_f24.b1 CHROMAT_FILE:
MSMg01no382_f24.b1 PHD_FILE: MSMg01no382_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:06 2005
         (484 letters)



>mm_chr6_41236222_41237105
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 481/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaagctttaattgatcatatgtcctggaatcacagttctctactttagcacccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgaagctttaattgatcatatgtcctggaatcacagttctctactttagcacccctc 260

                                                                       
Query: 61  acacacaacttgttgtagcaaaaatctgagtcctcctctctcagtagagttcaggattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacaacttgttgtagcaaaaatctgagtcctcctctctcagtagagttcaggattta 320

                                                                       
Query: 121 gttgcacttacatattacacttagcttatctcattggcctgacagtacttttcacataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgcacttacatattacacttagcttatctcattggcctgacagtacttttcacataga 380

                                                                       
Query: 181 aggatgcttctcttcattggagaacaagtatcaaccagattcctatgaccatactgattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatgcttctcttcattggagaacaagtatcaaccagattcctatgaccatactgattc 440

                                                                       
Query: 241 tcaggatgtatttattagctatagaaaatgggggacatttgagatttaaaattttttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggatgtatttattagctatagaaaatgggggacatttgagatttaaaattttttaaa 500

                                                                       
Query: 301 agttttcttagctgatctccagatgagaggtttcactagatgccatctcccaaggttatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttttcttagctgatctccagatgagaggtttcactagatgccatctcccaaggttatg 560

                                                                       
Query: 361 ctccaacatatatgagcaacctgtgcattgccaataaattactattatcacctacaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 ctccaacatatatgagcaacctgtgcattgccaataaattactattatctcctacaggtt 620

                                                                       
Query: 421 ttgtggtatatagacctgtcttggtggtctgattttattatcaacttangaaagaataat 480
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttgtggtatatagacctgtcttgttggtctgattttattatcaacttaggaaagaataat 680

               
Query: 481 gaag 484
           ||||
Sbjct: 681 gaag 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no382_f24.g1 MSMg01no382_f24.g1 CHROMAT_FILE:
MSMg01no382_f24.g1 PHD_FILE: MSMg01no382_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:06 2005
         (474 letters)



>mm_chr6_41396990_41397863
          Length = 874

 Score =  847 bits (438), Expect = 0.0
 Identities = 465/474 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgtcacctgcacccactcccacatgctccaataatttccatatcttcctatggcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agctgtcacctgcacccactcccacatgctccaataatttccatatcttcctatggcctt 615

                                                                       
Query: 61  gaggcagcatgccagttttagataatttctcaggtaaagaggaacccatcaaaaatcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaggcagcatgccagttttagataatttctcaggtaaagaggaacccatcaaaaatcaat 555

                                                                       
Query: 121 cctttctgaatctcacactaacatgattgtgaaaaatgaaagtatgtgaaccatctgaaa 180
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctttctgaacctcacactaacacgattgtgaaaaatgaaagtatgtgaaccatctgaaa 495

                                                                       
Query: 181 aacctgacagagatggcaatatgacagaccttccatttaggaatgatcccaggagcaagt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aacctgacagagatgacaatatgacagaccttccatttaggaatgatcccaggagcaagt 435

                                                                       
Query: 241 aaatgaaaaacaccatggagagatggcaactctgagtggctgttcagagatgtgaagctc 300
           ||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct: 434 aaatggaaaacaccatggaaaaatggcaactctgagcggctgttcagagatgtgaagctc 375

                                                                       
Query: 301 acatagtcatgccagtaatatgaccatcaagtgtcccatgaggcccattttctttttgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acatagtcatgccagtaatatgaccatcaagtgtcccatgaggcccattttctttttgca 315

                                                                       
Query: 361 gtttcttctgatttccaatttcttcagcctccaatcagtttgcctccccaattgccacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtttcttctgatttccaatttcttcagcctccaatcagtttgcctccccaattgccacaa 255

                                                                 
Query: 421 ttttatctaaacttctttcattaacagacagctccagaaccatcacaatttttc 474
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 254 ttttatctaaacttctctcgttaacagacagctccagaaccatcacaatttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)