Query= MSMg01no382_k09.b1 MSMg01no382_k09.b1 CHROMAT_FILE:
MSMg01no382_k09.b1 PHD_FILE: MSMg01no382_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:27 2005
(583 letters)
>mm_chr6_87393996_87394978
Length = 983
Score = 1035 bits (535), Expect = 0.0
Identities = 568/581 (97%), Gaps = 7/581 (1%)
Strand = Plus / Plus
Query: 7 gaattctgcagtgtattcaa---tgcttgcatgctcactcgctcctcccttgcttgcttg 63
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgcagtgta--caagaatgcttgcatgctcactcgctcctcccttgcttgcttg 263
Query: 64 catgtgaaggtcaaagatagaggttaagtgtcctttctcacttgctttcaaccttattat 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 catgtgaaggtcaaagatagaggttaagtgtccttcctcacttgctttcaaccttattat 323
Query: 124 ttgagacacaccctgctcccactgttgtgattcactcctctgtttgattcttagctgaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgagacacaccctgctcccactgttgtgattcactcctctgtttgattcttagctgaca 383
Query: 184 atcaggctttggatgggtgtttcctgacttccccaccccattataggaagtccgtctgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcaggctttggatgggtgtttcctgacttccccaccccattataggaagtccgtctgtg 443
Query: 244 cgtcacactgatgtgctaccagcagcatccttaaatcccctgataggcctgctgagaacc 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtcacactgatgcgctaccagcagcatccttaaatcccctgataggcctgctgagaacc 503
Query: 304 ttgaccctaccactaacaccatgggacttcctttaacctggcataaccaggttgtgtttg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 ttgaccctaccactaacaccatgggacttcctttaacctggcataaccaggt-gtgtttg 562
Query: 364 ttttgatctagtttgtgaattggaattattggaggaaaagtttccttttttttt-caatc 422
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 ttttgagctagtttgtgaattggaattattggaggaaaagtttccttttttttttcaatc 622
Query: 423 tttaaatttttttaaaattaaaatataattatgtcatttcttccattcctccttcctcta 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 623 tttaaatttttttaaaattaaaatataattatgttatttcttccattcctccttcctcta 682
Query: 483 acctttttatcctcccttgctttactctgagggagaattttcaaagtagtttcctgatga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acctttttatcctcccttgctttactctgagggagaattttcaaagtagtttcctgatga 742
Query: 543 tgcaggaaaatcactcgtggtcatgtacttatatagggtgt 583
|||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 743 tgcaggaaaatcactcttggtcatatacttatatagggtgt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_k09.g1 MSMg01no382_k09.g1 CHROMAT_FILE:
MSMg01no382_k09.g1 PHD_FILE: MSMg01no382_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:27 2005
(552 letters)
>mm_chr6_87550654_87551605
Length = 952
Score = 578 bits (299), Expect = e-169
Identities = 348/369 (94%), Gaps = 10/369 (2%)
Strand = Plus / Minus
Query: 183 cagttttaggtatgtgaaacctcaatttgagtagttgttttggagcagtctcagaggctc 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 952 cagttttaggtatgtgaaacctcaatttgagtagttgttttggagcagtctcagagactc 893
Query: 243 ttccaggagcatagttgaagcaagctatcatccacacatcttcacatctttgttatttgc 302
||||||||||||||||| ||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct: 892 ttccaggagcatagttg-agcaaactatcatccacacagcttcacagcttagttatttgc 834
Query: 303 tcttggtaactcttgtaagtgctattaaatcaaataccatcaaaaaacaaaaacaaaaac 362
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 833 tcttggtaactcttgtaagtgctattaaatcaaataccatcaaaa---aaaaacaaaaa- 778
Query: 363 aaaatcaaaaacaaaaacaaaacaacaaaaagtccgtgagcacttgaagcttgccatcag 422
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 777 -----caaaaacaaaaacaaaacgacaaaaagtccgtgagcacttgaagcttgctatcag 723
Query: 423 ggcagactgccatacccaacaagtctttgaaaagtaccaaacccctgctcaaactctgat 482
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 722 ggcagactgccacacccaacaagtctttgaaaaataccaaacccctgctcaaactctggt 663
Query: 483 agctgcaaatgagcttgaaggatgccagtggagtagaggatctgaggaagtgaagtagaa 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 662 agctgcaaatgagcttgaaggatgccagtggagtaaaggatctgaggaagtgaagtagaa 603
Query: 543 taggaactg 551
|||||||||
Sbjct: 602 taggaactg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
