BAC Information

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BAC

Clone NameMSMg01-382N12
Chromosome6 (Build37)
Map Location 21,163,425 - 21,164,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382N12.T7 (MSMg01no382_n12.b1)MSMg01-382N12.TJ (MSMg01no382_n12.g1)
ACCAG486652AG486653
length7331,663
length of high quality
(start - end)		586 (37 - 622)---
definitionCHROMAT_FILE: MSMg01no382_n12.b1 PHD_FILE: MSMg01no382_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:42 2005CHROMAT_FILE: MSMg01no382_n12.g1 PHD_FILE: MSMg01no382_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
CCTGGCACGGGTAACTAAGCACAGAGAGCAAACATCCATCTTGACAGTTA
AACCCATATAATACAGGGGATGTTTATTCTCATTCTTTGATGATTTTTTT
CTATACTTTAAGTTCATAGGTTCTCTTTGAGCATCCATTTAAAGTGGGCA
CATCAAGCCTAGAGTCTTTTGGAAGTCAATTTCTTTACAGCAAATCACAA
CCCACTTTCCTTCTAAACAAAAGACAAAGCCTTGAATAATAAATTTTTAT
GTAGAAGTCAGTCTGCTCTTTCTAGTGAACTCCACTTTTCAATGGTCTTA
ATGGTTTTGTTGATCATGCTTTGGTACTTCACATGTAATTTTTCAAAGAC
ATTTCAATAGGAAACTCTGTACATCATATTCCATGTCCATCAGAATGCAG
TCTGAAGCCTGAACAACGCGTGACATATAAACACTGAAAAAGTGGGTGGT
CGCAGGAAATTTAAAGATGTTTATGTGATCAGATTCTCTGTTGAATCAGT
AAATTTTTCTGATCCTTTGCCTTTCTAAAGCGGCAACCTTGGATGTAAAT
TTAACTTTTCGCCACTCCCGCCATCTAGTGGCCATGGTTGTTAAAAGCTT
GGGTTTAAGGAAGACACTTAATGACTGGGGGCGGGGTACACTAAGAACAA
AATCGGTTGGGCACTACAATTTTCCTGTCCCCC

GCCCATGTGNTTATNCGCGTTTAGTGGNTCTTCCTCANCTAGCAACTACA
GGAGGGCTANAGACCCATCCGACAGACGCGGGGATCTCACCGAGTGCTAC
TACTTCCACACNGNCGTACACGATCATGCGTGTGACGAACCCGAGATATA
GCGTAGCGACGGAGGATGCCGCGAGACTAGCAGAATCTGAGACGTNAGCA
TGATAGTCATCAACGTNTAGCGCTACCGCATACTNGTATTTCTTACTACT
CTCTANGCGTCCACGCACTACACGACACACTGTGTGGAGCGTGAATGCAG
GGATAACGTATACGCTGCACGCCGCACAACCNACANCCCGGAGCGTAGTG
CACAGCAAACGCTATGTACGTGGCGCCTCGTTCTGCAGTACTTGATAGTA
GTGGTGACTGGTCATACCGNCACTGCGTTCTGTGTGGCAGCGGCACNTCT
AGCCCGTGATAGTGCACGTCGACGTATAGTGTCTCGCTAGTATGTTGCGA
TTCTCGTATGCAGATAGATACGTGGACAGGGCGACTATGCTGTAGCGNGA
ACGTGTCGTAGGGAGACGACGTCTCTACGCTACGCGCATCTGCAAGACAT
CGAGTGCACATAGACAGTCATCGCATAGTACGACGATGACCGCCACGACA
CGTATAGATAGATGACAGACACGCGCACGTAAGAGGCGCTGCTGCGTATA
TATGAGTGTGCTGGTGCGACGGAAATAAACGTGAGATATGGCAAAATGGT
AGACGTACGAATGCGCGCGCNGCGACGCACGCTGATGAAGAATGCGCGAT
TGTGCGCTCGAGAAGATATATATCACACCATCGAAGAACGCACAAAGAGA
GATGCTGAAGCAGAACGAGAGTAGATAGATGAAGCGATCGGCGGAGCACA
GTATGTCATCGTAATCTATGTAGTAATAGCCTCACAACGATCGATTGATA
CGGCCGCGGCGGTAGTGCTGGAGACGTGCGATCCGACTGACGCCAGTGAC
GATGNACATATNCAGTCCGCGATCAGGCTACAAGGAGACGCGTACTGACA
TATCAGAGTAATCGCTATCTAGACGTACAATAGGTGACTGCCTGGATAGA
GCACGCGTGTCGGATGTAAATGATCAGTCCGTTGCGTTGCAGACTGCGGG
CCGATGTCGCGAGTAGTTCGATATCGAGTGTGNCTCGTCGCGTCGCACAC
CCTCGATATACAACGATGCAACGCTCACTCTCAGTGCGCTCTCGCGCTAC
GAGGATGCTCCACGTCATTAGTCGACAACATCGCTGCTGTCACACTCCTG
TACACCTCGCATACACTCGCGTGACTCATATATCGCACTGCTGTGTATCA
CTGNTGGTGCGNCTGTGCTGAGCGNCGTACTGACGATGCGCCTGTCGCGT
CGTGCGTCGATGTCAGGTCTCAGTTACAGCGCGCTATNATCTCGACAGTG
ATCTAAGTACATCCGACACCGACGCGCCGTGCGGAGCGCNCACGCTGTAT
TCCAGCGATAGCGCGTGCNAGACATACGGTAAGTACTATGACGTTGCTAT
GNGACGCTGACGGACCACACGTCTTGATTCGATCGCNCTACCATCTCGTC
CCTAGTCNCCGCCGTATCATATACTTATGCGGCGAGAGACTCTGTCGACA
GTGGTCNGTNAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_n12.b1 MSMg01no382_n12.b1 CHROMAT_FILE:
MSMg01no382_n12.b1 PHD_FILE: MSMg01no382_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:42 2005
         (586 letters)



>mm_chr6_21163222_21164207
          Length = 986

 Score = 1096 bits (567), Expect = 0.0
 Identities = 579/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaacctggcacgggtaactaagcacagagagcaaacatccatcttgacagtt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaacccggcacgggtaactaagcacagagagcaaacatccatcttgacagtt 263

                                                                       
Query: 64  aaacccatataatacaggggatgtttattctcattctttgatgatttttttctatacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaacccatataatacaggggatgtttattctcattctttgatgatttttttctatacttt 323

                                                                       
Query: 124 aagttcataggttctctttgagcatccatttaaagtgggcacatcaagcctagagtcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagttcataggttctctttgagcatccatttaaagtgggcacatcaagcctagagtcttt 383

                                                                       
Query: 184 tggaagtcaatttctttacagcaaatcacaacccactttccttctaaacaaaagacaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggaagtcaatttctttacagcaaatcacaacccactttccttctaaacaaaagacaaag 443

                                                                       
Query: 244 ccttgaataataaatttttatgtagaagtcagtctgctctttctagtgaactccactttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttgaataataaatttttatgtagaagtcagtctgctctttctagtgaactccactttt 503

                                                                       
Query: 304 caatggtcttaatggttttgttgatcatgctttggtacttcacatgtaatttttcaaaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatggtcttaatggttttgttgatcatgctttggtacttcacatgtaatttttcaaaga 563

                                                                       
Query: 364 catttcaataggaaactctgtacatcatattccatgtccatcagaatgcagtctgaagcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catttcaataggaaactctgtacatcatattccatgtccatcagaatgcagtctgaagcc 623

                                                                       
Query: 424 tgaacaacgcgtgacatataaacactgaaaaagtgggtggtcgcaggaaatttaaagatg 483
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 tgaacaacgcgtgacatataaacactgaaaaggtgggtggtcgcaggaaatttaaagatg 683

                                                                       
Query: 484 tttatgtgatcagattctctgttgaatcagtaaatttttctgatcctttgcctttctaaa 543
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttacgtgatcagattctctgttgaatcagtaaatttttctgatcctttgcctttctaaa 743

                                                      
Query: 544 gcggcaaccttggatgtaaatttaacttttcgccactcccgcc 586
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 744 gcggcaaccttggatgtaaatttaacttctcgccactcccgcc 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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