BAC Information

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BAC

Clone NameMSMg01-384D24
Chromosome6 (Build37)
Map Location 35,815,380 - 35,815,813
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384D24.T7 (MSMg01no384_d24.b1)MSMg01-384D24.TJ (MSMg01no384_d24.g1)
ACCAG487731AG487732
length773776
length of high quality
(start - end)		---434 (62 - 495)
definitionCHROMAT_FILE: MSMg01no384_d24.b1 PHD_FILE: MSMg01no384_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:30 2005CHROMAT_FILE: MSMg01no384_d24.g1 PHD_FILE: MSMg01no384_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCAAACGACTCCTATATCAGAGGAGGCGGGAATCTTTGGATTCCCAGA
AAGAGGGAGCGGCCCCGCTCGGCGCCCCTCCTATCTAATGCTCACCGTTT
CGCTCCCTCCTTCCCTGTATCGATGTAATCTCCGAGTATTCCTTGAACGC
TTCCACCCCTTTCATACCACGCACTGACCGAGAAGATAGTATAATCCTGG
AGAGAGAAACACTATTATCTTCACGCGCCGCTGCGGGTGGAGTTGGTCGG
TCACTTGCGCGAACGGGTCGTGAAATGCCCGGAGTGCTTCGTAAATGGTC
GGGGGGTCGGGCTCGCTCGCGAGCCTTTTTGCCTGAAGTTGTGCGCCTGT
TTAACTCTATGGGGAACCTAGTAAGGACCACTGCAACCCTGGCCATTGCG
ACGTATCGGAAGACCCACGGGGTGTGGAAAAAAAGACAGGTTGTTAAAAC
GTTGGGTGTACGGACACTTGATAAAAAACCTAAAGAAATAAAAAACGCTG
ACAATACTATCGAAATCGCCCACCTTAAGGAGGAAAAAGTAGAATAGAGT
TACACGAGTCGAAAAAAATGCTAAAAAAACATGGACACGACCCTTGCAAG
AAGTGCCGCGAAAATGTAAAAAAAGCCGCGAGTAGATAGGGAGTGTGACA
GGCGGTGAACGGCGAAAAATATGTTCACATAACACTGTAACTTTGCTATT
TGTAAGAAAAAAAAAAATATAGTGAGAAGGGAGAAACTGAATTTGTAGAA
AGAAAGATGTATTAACAGTGTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATAGTGACCTCCAACCTATTCCTTGTCTCAGCTACATC
ACTCGTTTTGGCCAACATTAGCAAATGTATCATTAAACAAAGGTTGGAAA
ATCAGCATGCATAGTAGACTATATTTTTGATGTTCTTAGACACCCTGCAA
ATGTATGAATAAACCCAGAACCCTGGATGATGAGGATCACATGGTCCAGC
AGCCTCTCACATCAATCAGCTTCCAACCAGTCCCCAGCAATAGAGAGAAT
GCTGCTGCTGCAAGTGTATAGAGGAGCCAACAAAGGTGTTCCCAGCCGCA
CTCAGCCCCAAATGACAACCAAATGAATCTGAGCAAAAGTAATGCTATTG
TTTAGGCAATTAACTTTTTAGACAGTTTGCTACACAGCAAAAGCTAAGCA
ATATAATGAAAATCCTGAGCCAGGAATCTTAAACTTCATTTATTTAAATA
CAAATCAATATAATCAGCATGTGCTTGTTAAAGCAGGCTGAAATGAGTTG
ATAAAATCCTTCTTGAGGGAGTAAAAAGTCTCCACAGTTAGTATCCTATA
AAGCCAGGTTTCAGACACTCTCTACTATCTTAAAATTTTGATCCTGTCAC
TACAATTGTTTTTCTATTTCCTTCCAATATCTCTTTTTCCCTCTTTCTCC
CTTTATTTTTTTTCCTACACTTTTTTTCTCTTTATTCTTTTCCCCTCCCT
TTCACCTTTATTTTCTTCTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_d24.g1 MSMg01no384_d24.g1 CHROMAT_FILE:
MSMg01no384_d24.g1 PHD_FILE: MSMg01no384_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:30 2005
         (434 letters)



>mm_chr6_35815336_35816169
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagtgacctccaacctattccttgtctcagctacatcactcgttttggccaacattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tatagtgacctccaacctattccttgtctcagctacatcactcgttttggccaacattag 419

                                                                       
Query: 61  caaatgtatcattaaacaaaggttggaaaatcagcatgcatagtagactatatttttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaatgtatcattaaacaaaggttggaaaatcagcatgcatagtagactatatttttgat 359

                                                                       
Query: 121 gttcttagacaccctgcaaatgtatgaataaacccagaaccctggatgatgaggatcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gttcttagacaccctgcaaatgtatgaataaacccagaaccctggatgatgaggatcaca 299

                                                                       
Query: 181 tggtccagcagcctctcacatcaatcagcttccaaccagtccccagcaatagagagaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggtccagcagcctctcacatcaatcagcttccaaccagtccccagcaatagagagaatg 239

                                                                       
Query: 241 ctgctgctgcaagtgtatagaggagccaacaaaggtgttcccagccgcactcagccccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctgctgctgcaagtgtatagaggagccaacaaaggtgttcccagccgcactcagccccaa 179

                                                                       
Query: 301 atgacaaccaaatgaatctgagcaaaagtaatgctattgtttaggcaattaactttttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atgacaaccaaatgaatctgagcaaaagtaatgctattgtttaggcaattaactttttag 119

                                                                       
Query: 361 acagtttgctacacagcaaaagctaagcaatataatgaaaatcctgagccaggaatctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 acagtttgctacacagcaaaagctaagcaatataatgaaaatcctgagccaggaatctta 59

                         
Query: 421 aacttcatttattt 434
           ||||||||||||||
Sbjct: 58  aacttcatttattt 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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