BAC Information

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BAC

Clone NameMSMg01-384E07
Chromosome6 (Build37)
Map Location 61,655,706 - 61,851,171
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E07.T7 (MSMg01no384_e07.b1)MSMg01-384E07.TJ (MSMg01no384_e07.g1)
ACCAG487745AG487746
length736741
length of high quality
(start - end)
473 (37 - 509)495 (67 - 561)
definitionCHROMAT_FILE: MSMg01no384_e07.b1 PHD_FILE: MSMg01no384_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005CHROMAT_FILE: MSMg01no384_e07.g1 PHD_FILE: MSMg01no384_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,850,701 - 61,851,171)(61,655,706 - 61,656,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
AGAGCTTATATTCCCTTATAGATGTTGATCTTCCACCCTGTTTTCAATAT
GTTTTTCAAAGCATCTCTACTCTCCAAAGAGAAATATGTGAAAGTGTTTT
TTAAGCCATAAGATTTTTCATATTTATGAATCTAGCTACAGACATGTATC
CTGAAGGAAGTGCCTTTAATATGTTCTGACGTCTCAAAAATAGCCCAGAG
TTGGGAAATATTCTAAGCAGTGAAGAAAACTCTCAGACTTCCTCCTATCT
CTGAAAATATTATGCATGAGTGGAACAAAATATAGAGTAACATGACAACA
ATACAGGATGTGCTTGGAATTCAGTTTCTTTGGGTTGATGTAGTCCAAGA
CAGAGACACAAAGCTAAAAGCAAGTGATCAGTCATCTGAGTGGAGGAGGA
AGTTGTGTTATGACTTGCTTTTTTGATAAACCTGAGTCAAGGTATGTTTT
TCCTAGTCTTGTTCAGAGTGTTGGGGAGCTAANATTATGTTTAATAATGT
AAAGTTTAAACATTANGCATCATATATATATATATATATATTGGAAAGCT
ATTAACAATGGGGAATTAAAGCTAAATAAAATATTTGTGGGACTAACCTA
TTTATATATGAACCGTACCCCTTAATTAAAACCGTTTTTAATTGCACTGA
CAGGAAAAGGACCTTGGAGGGCCTTAAAAAAGGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGTGCTGAAGTTACATTGCCTCGTATCAAAGTA
TTAAGAACTAGGCTACTGAAAGTTAAGCCTGGTGGAATATAATTAGACTA
TAAGGCTTTCCTCTCTTGAATGACTGGGCCAGGCCTGGTAGGAGTATATT
AGTTCCCATGAGCACTTGAGTATAAAGAAAGGCTTCCCTCCCTAGTTTCT
TGTTTGCCATATTATTCTATATATTCTCCCTACAATGTGTTATCATTGTC
CCAAGACAATTATCTAAATATAGAATGTGCTGGGACCTTGTTCTTTATCT
TTCAGAACTGAGCTACATTTCTTTTCTTTATAAATATCTAGTTTCATATA
AGTTGTCATGGAAACCAAATATTCACCAAGACAGTTAATATTATTCATGT
CCGCTATTCACATATTTTTTGAAGGAAGCTTGCATGTTGCTAATTGTGCT
ATTGGCAACTCACTAGTTTATTTCCAGTACGTTTTAGCACAATCTGTAAT
ATGGACTTTCTTCCCACCAGACAGTGCTTTGTTGATGTCAGCAGTGACTG
ACACTTTGTTATCACAAAACAGCTATTCAGGCTTACTTACTCCTCTATTT
TGTTTAAATTCATCAAACCCTTGCGAACCATTCTGGCCATGTTAATTTCC
TGGCTAAACCGGCCTAAGTCTTACCACCCCCGATTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e07.b1 MSMg01no384_e07.b1 CHROMAT_FILE:
MSMg01no384_e07.b1 PHD_FILE: MSMg01no384_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
         (473 letters)



>mm_chr6_61850498_61851371
          Length = 874

 Score =  895 bits (463), Expect = 0.0
 Identities = 469/471 (99%), Gaps = 1/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtaagagcttatattcccttatagatgttgatcttccaccctgttttc-aat 62
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 674 ggaattctgtaagagcttatattcccttatagatgttgatcttccaccctgttttcaaat 615

                                                                       
Query: 63  atgtttttcaaagcatctctactctccaaagagaaatatgtgaaagtgttttttaagcca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atgtttttcaaagcatctctactctccaaagagaaatatgtgaaagtgttttttaagcca 555

                                                                       
Query: 123 taagatttttcatatttatgaatctagctacagacatgtatcctgaaggaagtgccttta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taagatttttcatatttatgaatctagctacagacatgtatcctgaaggaagtgccttta 495

                                                                       
Query: 183 atatgttctgacgtctcaaaaatagcccagagttgggaaatattctaagcagtgaagaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atatgttctgacgtctcaaaaatagcccagagttgggaaatattctaagcagtgaagaaa 435

                                                                       
Query: 243 actctcagacttcctcctatctctgaaaatattatgcatgagtggaacaaaatatagagt 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 434 actctcagacttcctcctatctctgaaaatattatgcacgagtggaacaaaatatagagt 375

                                                                       
Query: 303 aacatgacaacaatacaggatgtgcttggaattcagtttctttgggttgatgtagtccaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aacatgacaacaatacaggatgtgcttggaattcagtttctttgggttgatgtagtccaa 315

                                                                       
Query: 363 gacagagacacaaagctaaaagcaagtgatcagtcatctgagtggaggaggaagttgtgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gacagagacacaaagctaaaagcaagtgatcagtcatctgagtggaggaggaagttgtgt 255

                                                              
Query: 423 tatgacttgcttttttgataaacctgagtcaaggtatgtttttcctagtct 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatgacttgcttttttgataaacctgagtcaaggtatgtttttcctagtct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space:   400032
Effective search space used:   400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no384_e07.g1 MSMg01no384_e07.g1 CHROMAT_FILE:
MSMg01no384_e07.g1 PHD_FILE: MSMg01no384_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
         (495 letters)



>mm_chr6_61655506_61656400
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgctgaagttacattgcctcgtatcaaagtattaagaactaggctactgaaagttaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgctgaagttacattgccttgtatcaaagtattaagaactaggctactgaaagttaa 260

                                                                       
Query: 61  gcctggtggaatataattagactataaggctttcctctcttgaatgactgggccaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctggtggaatataattagactataaggctttcctctcttgaatgactgggccaggcct 320

                                                                       
Query: 121 ggtaggagtatattagttcccatgagcacttgagtataaagaaaggcttccctccctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ggtaggagtatattagttcccatgagcacttgagtataaagaaagacttccctccctagt 380

                                                                       
Query: 181 ttcttgtttgccatattattctatatattctccctacaatgtgttatcattgtcccaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttgtttgccatattattctatatattctccctacaatgtgttatcattgtcccaaga 440

                                                                       
Query: 241 caattatctaaatatagaatgtgctgggaccttgttctttatctttcagaactgagctac 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattatctaaatatagaacgtgctgggaccttgttctttatctttcagaactgagctac 500

                                                                       
Query: 301 atttcttttctttataaatatctagtttcatataagttgtcatggaaaccaaatattcac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atttcttttctttataaatatctagtttcatataagttgtcatggaaaccaaatatgcac 560

                                                                       
Query: 361 caagacagttaatattattcatgtccgctattcacatattttttgaaggaagcttgcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagacagttaatattattcatgtccgctattcacatattttttgaaggaagcttgcatg 620

                                                                       
Query: 421 ttgctaattgtgctattggcaactcactagtttatttccagtacgttttagcacaatctg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctaattgtgctattggcagctcactagtttatttccagtacgttttagcacaatctg 680

                          
Query: 481 taatatggactttct 495
           |||||||||||||||
Sbjct: 681 taatatggactttct 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)