BAC Information

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BAC

Clone NameMSMg01-384L04
Chromosome6 (Build37)
Map Location 58,154,935 - 58,155,476
singlet/doubletsinglet
Overlap geneLOC100041571
Upstream geneV1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893
Downstream geneV1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L04.T7 (MSMg01no384_l04.b1)MSMg01-384L04.TJ (MSMg01no384_l04.g1)
ACCAG488073AG488074
length757741
length of high quality
(start - end)		554 (33 - 586)584 (63 - 646)
definitionCHROMAT_FILE: MSMg01no384_l04.b1 PHD_FILE: MSMg01no384_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:03 2005CHROMAT_FILE: MSMg01no384_l04.g1 PHD_FILE: MSMg01no384_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTTTGA
CGTGAAAAATACAATTAGAATTCTGCCAGTCTCCAAGTGTCACAAATTGC
TTCTGAGATAAAAAATAGGCATTTACAACTTAAAACACTTTCCAGAAGAT
TGTAAAACAATTAACAAAGGGACAAAGAAATGGAACTAACTAATTATTGT
AAGTATAAGAACAGAAGATAAAATATTGGCTGGGTTTTGATAATAGCTTA
GATACAAAAATTAATGGATTTTTTTCAATGAACTTGTAGAGCCAGAGACA
AATCATATCTAAACTTAATGAGAACGCATGTAAATATCTATGTTGTAACC
TTCTTATTCAATTTATGATTTGATTTATGGGGAAATTCGTTGGGAATTTT
TAACCATGTGGTTTATTCCCCTGGAAAAGGTACTAAAAACTTAGAATGAT
TACATTGGATTTCTAAGACATGAGACTAAGATACAATATAAGTATACAAA
GTATGCATACTGTAGAAATACATGTGAAATCATTTGCTGTCTCTCTCTAT
ACACACACACACACACTCAGGAGATACATGGATGGTATATAGAATTACAG
GTTATAAAGATCTAAAGTTACAGAAACAGACTAATCCACAATTGGTAAAG
GAAAATAGAATGATGATAGAGCCCTGTTGTCCAGTGAATCTTAAGTTTGG
ACGGATAATCACTTAACTTTTTTTTTCCGAAAATATGGGACAAACATTCC
CCTAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATACAGTTGGAGTGGTAGGAGAAGAGTCATGAGAGCTG
CTATCAGGATATAAAGGGAATAAATAAATAAATACATAAATAAATAAAGA
CAAATAAAAATAATTTGAGTCATGTCCTAGCAAATTTCGTAGCACTCATG
AAAGCTCTAAATCTAAAAGAAACAAGCACATCAAAGATGAGTGAGAACAG
AAAATAATCTAAGACACAAAAACCAATCAAATAGAAACAAAAAGATATTG
ACTCTTGCTTGGAGACCAGGTGGTCCCATTTGCCATCAGCTTTCTTCTCA
GCATGGGCCAGTAGCCTTTGCTTCTCTTGCTTTGTCTCTGGCCTGTATTT
GTGGGCAAGCATAAGCAGCTGAGTAGCTGTTTGCCTGTCCAGGGCCTGGG
TGAGCTGGTTAATAGAAGGAGGTACTTTGAGCTGCTTATAGAGGACAGTT
TTTGACTGATTCAGCCTGATGTAGAGGGGCCATTTGACAAATCATGTTAG
ATCTCTTTTGGGCTAGATGTCCTGCCCAATGCTGAAGTTCTTGGACCTTT
TCTCAGACAAAGGAGTGACCATCTTATTGGCCTCCTGTTTCTTAAAAATG
CCAGTGGGTGGGCACCTTCTTCCCCTTGGCCTTTCTTCTTTTGGGTATCT
GGTGGAGAACAACAAGCTCAAAAGGTGGTGATTGGCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l04.b1 MSMg01no384_l04.b1 CHROMAT_FILE:
MSMg01no384_l04.b1 PHD_FILE: MSMg01no384_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:03 2005
         (554 letters)



>mm_chr6_58154731_58155678
          Length = 948

 Score = 1002 bits (518), Expect = 0.0
 Identities = 538/548 (98%), Gaps = 6/548 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctttgacgtgaaaaatacaattagaattctgccagtctccaagtgtcacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctttgacgtgaaaaatacaattagaattctgccagtctccaagtgtcacaaa 264

                                                                       
Query: 65  ttgcttctgagataaaaaataggcatttacaacttaaaacactttccagaagattgtaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgcttctgagataaaaaataggcatttacaacttaaaacactttccagaagattgtaaa 324

                                                                       
Query: 125 acaattaacaaagggacaaagaaatggaactaactaattattgtaagtataagaacagaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 acaattaacaaagggacaaagaaatggaactaactaattattgtaagtataagagcagaa 384

                                                                       
Query: 185 gataaaatattggctgggttttgataatagcttagatacaaaaattaatggatttttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaaatattggctgggttttgataatagcttagatacaaaaattaatggatttttttc 444

                                                                       
Query: 245 aatgaacttgtagagccagagacaaatcatatctaaacttaatgagaacgcatgtaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 aatgaacttgtagagccagagacaaatcatatctaaacttaatgagaacacatgtaaata 504

                                                                       
Query: 305 tctatgttgtaaccttcttattcaatttatgatttgatttatggggaaattcgttgggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctatgttgtaaccttcttattcaatttatgatttgatttatggggaaattcgttgggaa 564

                                                                       
Query: 365 tttttaaccatgtggtttattcccctggaaaaggtactaaaaacttagaatgattacatt 424
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 tatttaaccatgtggtttattcccctggaaaaggtacgaaaaacttagaatgattacatt 624

                                                                       
Query: 425 ggatttctaagacatgagactaagatacaatataagtatacaaagtatgcatactgtaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggatttctaagacatgagactaagatacaatataagtatacaaagtatgcatactgtaga 684

                                                                       
Query: 485 aatacatgtgaaatcatttgctgtctctctctatacacacacacacacactcaggagata 544
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 685 aatacatgtgaaatcatttgctgtctctctctatacacacacac------tcaggagata 738

                   
Query: 545 catggatg 552
           ||||||||
Sbjct: 739 catggatg 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 948
Length adjustment: 10
Effective length of query: 544
Effective length of database: 938
Effective search space:   510272
Effective search space used:   510272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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