BAC Information

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BAC

Clone NameMSMg01-384N05
Chromosome6 (Build37)
Map Location 114,209,956 - 114,210,268
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
Downstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N05.T7 (MSMg01no384_n05.b1)MSMg01-384N05.TJ (MSMg01no384_n05.g1)
ACCAG488170AG488171
length747738
length of high quality
(start - end)		476 (36 - 511)314 (66 - 379)
definitionCHROMAT_FILE: MSMg01no384_n05.b1 PHD_FILE: MSMg01no384_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:12 2005CHROMAT_FILE: MSMg01no384_n05.g1 PHD_FILE: MSMg01no384_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTG
GTTTGTAGGAGAAATGTGGAAGAGCTTGATGTGTGCTAGAGATGCCCCAG
AATGCTGTCAGTTCTGGGGTGACATCTGTGAGACATCGGAGTGCAAATAG
AAAAGCTGGGTGTTAGGCAGCACACTCAGAAGGCCCAGATGGGAACAGGG
ACTCTAGAGCTGACCTTAAGTCTCTGAACAGATTTTCAATTTTGGATGTT
TTTTAAAAGAATTGTTTATTTTTATTTTATGTAGGAAGATGTTTTGCCTA
CAGGTATGTATGTGAAGCATGTGCATTCACACCCACAGAGGCCAAAAGAA
GTTACTGGATCCCCTGGAACTGGAATTACAGACAGTCGTGAGCTATAATG
AGGTGCTGGGAATTAAGCCTGGGTTCTCCAGAATTGCAGCAAGGGCACCA
CGGAGCAACCTCTCCAGGTCCCTGAATTTTCAAATGTTGAACAGTGTTGA
TACTTGGGGTACTCCAAGTTGAACTGAATGCATTCTGCGAGATTTGATGC
CCATGAATCTTGTAGTGGCCATAGTGGAATGGGACAGTTTGTATCTGAAA
ATGCCTCCTCACTCCCGGCCTGGGAGGTTTTCTTCCTATAATTTGGTTGG
CTCCCCCCGTGTCTTTTGTTTTCCCCCCATTTTCCGGTCCTCCTCCACTT
TCTTTCCCCCTGCCATGCTTTTTTACACTTCTTTTCATTTCTTTCTC

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGTGTTTTGTCGTGAACCTGAGAGCCAGGCTTCT
GAGGGGGCCTAGGGACAGTGCAAGTACCTCAGGGGTGGCAGCAGCTGGAA
GCTCAGGAGCAGATGCCAGGTGACAGTCATCGCTGATTTCCTAGGTCAGG
GCTTCAGTAAGCTTGTCCAGCCTGCAAAGGGGGTCTGCAGCTTTGCGAGT
GCACTAGGAGCCTCATGGCTTCTTCATCTTGGGCAGCTTTTTCCCTACTC
TTTCCCTCTGGCTTTCTTTCCAGCCTCCCCCACCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTNTTTTNTNNTTTTTTNTTTTTT
TTTTTNTTTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTNTTT
TTTNTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTNTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTT
NNNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n05.g1 MSMg01no384_n05.g1 CHROMAT_FILE:
MSMg01no384_n05.g1 PHD_FILE: MSMg01no384_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:13 2005
         (314 letters)



>mm_chr6_114209756_114210469
          Length = 714

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgttttgtcgtgaacctgagagccaggcttctgagggggcctagggacagtgcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgttttgtcgtgaacctgagagccaggcttctgagggggcctagggacagtgcaagt 260

                                                                       
Query: 61  acctcaggggtggcagcagctggaagctcaggagcagatgccaggtgacagtcatcgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctcaggggtggcagcagctggaagctcaggagcagatgccaggtgacagtcatcgctg 320

                                                                       
Query: 121 atttcctaggtcagggcttcagtaagcttgtccagcctgcaaagggggtctgcagctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcctaggtcagggcttcagtaagcttgtccagcctgcaaagggggtctgcagctttg 380

                                                                       
Query: 181 cgagtgcactaggagcctcatggcttcttcatcttgggcagctttttccctactctttcc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtgcactaggagcctcatggcttcttcatcttgggcagctttttccctactctttcc 440

                                                                       
Query: 241 ctctggctttctttccagcctcccccaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ctctggctttctttccagcctcccccaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 500

                        
Query: 301 tgtgtgtgtgtgt 313
           |||||||||||||
Sbjct: 501 tgtgtgtgtgtgt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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