BAC Information

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BAC

Clone NameMSMg01-385D22
Chromosome6 (Build37)
Map Location 89,237,882 - 89,238,399
singlet/doubletsinglet
Overlap genenone
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik
Downstream genePlxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385D22.T7 (MSMg01no385_d22.b1)MSMg01-385D22.TJ (MSMg01no385_d22.g1)
ACCAG488490AG488491
length752741
length of high quality
(start - end)		519 (35 - 553)486 (62 - 547)
definitionCHROMAT_FILE: MSMg01no385_d22.b1 PHD_FILE: MSMg01no385_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:45 2005CHROMAT_FILE: MSMg01no385_d22.g1 PHD_FILE: MSMg01no385_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGGTT
CACTTGTATGCAAATATATGCACCTGTTGGGAGGGAGGTGGGTAATCTCC
GGAAACAGGAAGCAGCTCATCAAAGGCCCAGAATCTCAGAATCTCTGGAG
GGCAGCAGAGGGGGAAGGGCTGGTGTGGTTCAATGGTGGAGCACTCCGGA
CAGGTGACACTCTGGGTCCTGGAAGCACTGGGGGCCCCCCCGGAATGTTG
AGATGGGGAACCCTCAGCCCAAGGCATGCACAGGACAAAAGGCAGAGCAG
CCTTCCTTATCTTGTGTCAGTTCATAGTGACGGGAAAATAATTTATACAT
ATTAATAAACTTGAATGTATTCTCCCTGCATCTTCAAAAAAAAAAGTGAC
AACCTAGCTGGAGAGATGGCTCAGTCAGGAAAGGGCTTGCTGCTCTTGTA
GAGGACCTGAGTTTAGTTCCCACCACCCACCTGGTGTCTCACAACTGCCT
GGACTCCACTTATAGGGGATCTGGTGCCTTGTCTGGCATCCATATGTACC
CACATGTGCACACACATCAATACAAATAAAGCGAATTTTTTTTTGTTTTG
CTTTGGTTTGTTTTGAGACAGGGTTTCTCTGAATAGCCCTGGCTGTTCTG
GGACTCACTTTGTAGAACAAGCTGGGCTCCACCTCTGAAATCCCCCTGCC
GCTGGCTCCCGAATGGTGGGAATAAAAGGGGGGGCCACCCCCCCCGCGTA
AG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTGAGAAATCCGC
CTCCCTCTGCCTCCCGAGTGCTTGGATTAAAGGCGTGCACCACCACTTCC
AGGGACACTGAAACTTATAGTGGAGAAAGTGGGGAAAAGCCTCGAAGATA
TTGGCACAGGTGAAACATTCCTGAATAGAACAGCAATGGCTTGTGCTGTA
AGATCGAGAATTGACAAATGGGACCTTATGAAACTGCAAAGCTTCTGTAA
GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA
GGATCTTTACCTATCCTAAATCAGATAGAGGACTAATATCCAATATATAT
AAAGAACTCAAGAAGGTAGACTCCAGAAAAACAAATAACCCCATTAAAAA
ATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGGAATACCGGATGG
CTGAGAAACACCTGAAAAAAAAAATGTTCAGCATCCTTAATCATCAGGGA
AATGAAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTTAGATCAAAAATTCCNGTGACACCACATGATGGCGAAGATGTGAGAAA
AGAGAACACCCCCCCTTGTTTGGGGGATTGGAAGGTTTGTCAACCCTCCG
GAAACCAACTGGGGTTCTTCCAAAATTGGACTGGGCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_d22.b1 MSMg01no385_d22.b1 CHROMAT_FILE:
MSMg01no385_d22.b1 PHD_FILE: MSMg01no385_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:45 2005
         (519 letters)



>mm_chr6_89237826_89238746
          Length = 921

 Score =  944 bits (488), Expect = 0.0
 Identities = 510/518 (98%), Gaps = 2/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacggttcacttgtatgcaaatatatgcacctgttgggagggaggtgggtaatc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaattcacggttcaattgtatgcaaatatatgcacctgttgggagggaggtgggtaatc 515

                                                                       
Query: 64  tccggaaacaggaagcagctcatcaaaggcccagaatctcagaatctctggagggcagca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tccggaaacaggaagcagctcatcaaaggcccagaatctcagaatctctggagggcagca 455

                                                                       
Query: 124 gagggggaagggctggtgtggttcaatggtggagcactccggacaggtgacactctgggt 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 454 gagggggaagggctggtgtggttcaatggtggagcactcgggacaggtgacactctgggt 395

                                                                       
Query: 184 cctggaagcactgggggcccccccggaatgttgagatggggaaccctcagcccaaggcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cctggaagcactgggggcccccccggaatgttgagatggggaaccctcagcccaaggcat 335

                                                                       
Query: 244 gcacaggacaaaaggcagagcagccttccttatcttgtgtcagttcatagtgacgggaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcacaggacaaaaggcagagcagccttccttatcttgtgtcagttcatagtgacgggaaa 275

                                                                       
Query: 304 ataatttatacatattaataaacttgaatgtattctccctgcatcttc--aaaaaaaaaa 361
           |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||
Sbjct: 274 ataatttatacatattaataaacttgaacgtattctccctgcatcttcaaaaaaaaaaaa 215

                                                                       
Query: 362 gtgacaacctagctggagagatggctcagtcaggaaagggcttgctgctcttgtagagga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gtgacaacctagctggagagatggctcagtcaggaaagggcttgctgctcttgtagagga 155

                                                                       
Query: 422 cctgagtttagttcccaccacccacctggtgtctcacaactgcctggactccacttatag 481
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  
Sbjct: 154 cctgagtttagttcccatcacccacctggtgtctcacaactgcctggactccacttatct 95

                                                 
Query: 482 gggatctggtgccttgtctggcatccatatgtacccac 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gggatctggtgccttgtctggcatccatatgtacccac 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space:   463699
Effective search space used:   463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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