BAC Information

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BAC

Clone NameMSMg01-385M04
Chromosome6 (Build37)
Map Location 50,787,791 - 50,788,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385M04.T7 (MSMg01no385_m04.b1)MSMg01-385M04.TJ (MSMg01no385_m04.g1)
ACCAG488885AG488886
length756766
length of high quality
(start - end)
527 (25 - 551)435 (58 - 492)
definitionCHROMAT_FILE: MSMg01no385_m04.b1 PHD_FILE: MSMg01no385_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:25 2005CHROMAT_FILE: MSMg01no385_m04.g1 PHD_FILE: MSMg01no385_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAACGACTCACTATTTCCAGAGGATCCGCGGAATTCACCGTATTTTCGT
TAAACTAGACAGTTGTAAGATCTGCAAAAGTGTAAAAGAATGCCACTCCC
TTCCAAACATTAACCATCGTTAACTGTGGCAAAACGCAATTAACATAAAG
TTTATTGTCTTCTACTACACATTTAGGCTGTGGGATATGAGAAATCACTT
TCTAACTGAATGGGAAATTTCTTCTTCTCTGGCTAGCTTTCATAATGCCA
GATGGTGCTATGCAGGATGCTGAGGCAGACCAGAAATCAATGATCTTATC
CTATCCTGAGTTTCATGTGCTCAATTTGAACCCCCCAAGTAAGATTGCCC
GTGGGCACAACAGTGGCACAACTACTGTGGGCTAAGGAACCACTTTCTGA
TCGGCCTTGAGGGCTGATTCTCAGGAAGGGATTGCGTGCCTGGTCTTGTA
ACTCTGTCAACGGCCCATAGATGGGGAGCTCATAAGCCCTAGAGCAGAAG
CTGTTATTGTTATCCTTAAAATAGTCATGCAGTCATATTGCCCTCTAAAT
ATTTGTGCTTATATCCCTAGGCCTGGCTGCTCTCAATCTTGTTAGAAGAA
GTTTCTCCTCCAATTTTTTCACTAGTAAAGAAAGGGCTTGCTTCATCCTA
CAGCTTTGCACCTCATTCTCCAGCGGACGCATTAGGATGAGCTCAAGGCT
GGTACACCAATAACCACTACTATCTGTTCCCCCGCTTGTTCCCCTAGTCT
CCCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCCTTCTATTATGCTGCCCCAGCCTCCTCCAGATGAAGTCT
CAGGTACCTGCCATGGGTTGGTTCTATCTCTTTGGGAAATGTTTCATAGG
AAACTTAGTCCCCAAAAGGCATATGCTGATACTGTTCAGACATAGGGACT
ACTGTAGAATCATGGTGACTCTGTCTTCATGAATAGGTGACTACCTATGG
GTTAATGAATTAATGAATCAATGGGATATGTGTAGTGGGATTTATTGTAA
TAGATTAAGAATCTTTTTTGAGCTTATAATTTAATTACATTTCTGTCTTC
CCTTTCTCTCTTTCCTTCCTTCTAAACCATCCCACATATCCCTCCTGCTC
TCCTTTCAAACGACTTTTCTCTCTGTTATTGCATGCTCATAAGGATATGC
ACATACACTTGCATTCCTAAATGTAACCCATTCTGTGTAATATTATTTGT
GTGAATGCTGCCCGGGATTAATGTTTGTTACTGAACATCCATCTGTTTGT
TTTTTCCTGGGTCACACCACCTCCCCTGCTCACACCTTTTCTTTGCTAGT
CTATAGACCCTTGTTGTTTATTTGACCCTCTCTTTTCTTTTTTTTTTATT
CTTTTTTGTTTTCTTTTCTCCTCTTCCTTATTCTGTCCCCATTCCCGCAT
TCCCCCCTCCTCGGCTTCTTAATTTTTCTCCACCATTTTCCTTACCCTCC
CTTTCCTTTTCCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_m04.g1 MSMg01no385_m04.g1 CHROMAT_FILE:
MSMg01no385_m04.g1 PHD_FILE: MSMg01no385_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:25 2005
         (435 letters)



>mm_chr6_50787591_50788429
          Length = 839

 Score =  775 bits (401), Expect = 0.0
 Identities = 427/437 (97%), Gaps = 4/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccttctattatgctgccccagcctcctccagatgaagtctcaggtacctgccatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctgccttctattatgctgccccagcctcctccagatgaagtctcaggtacctgccgtggg 260

                                                                       
Query: 61  ttggttctatctctttgggaaatgtttcataggaaacttagtccccaaaaggcatatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggttctatctctttgggaaatgtttcataggaaacttagtccccaaaaggcatatgct 320

                                                                       
Query: 121 gatactgttcagacatagggactactgtagaatcatggtgactctgtcttcatgaatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatactgttcagacatagggactactgtagaatcatggtgactctgtcttcatgaatagg 380

                                                                       
Query: 181 tgactacctatgggttaatgaattaatgaatcaatgggatatgtgtagtgggatttattg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 381 tgactacctatgggttaatgaattaataaatcaatgggatatgtgtagtgggatttattt 440

                                                                       
Query: 241 taatagattaagaa-tcttttttgagcttataatttaattacatttctgtcttccctttc 299
           |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatagataaaaaaatcttttttgagcttataatttaattacatttctgtcttccctttc 500

                                                                       
Query: 300 tctctttccttccttctaaaccatcccacatatccctcctgctctcctttcaaacgactt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctttccttccttctaaaccatcccacatatccctcctgctctcctttcaaacgactt 560

                                                                       
Query: 360 ---ttctctctgttattgcatgctcataaggatatgcacatacacttgcattcctaaatg 416
              |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttctttctgttattgcatgctcataaggatatgcacatacacttgcattcctaaatg 620

                            
Query: 417 taacccattctgtgtaa 433
           |||||||||||||||||
Sbjct: 621 taacccattctgtgtaa 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 839
Length adjustment: 9
Effective length of query: 426
Effective length of database: 830
Effective search space:   353580
Effective search space used:   353580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)