BAC Information

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BAC

Clone NameMSMg01-387I02
Chromosome6 (Build37)
Map Location 66,732,065 - 66,732,497
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13
Downstream geneEG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I02.T7 (MSMg01no387_i02.b1)MSMg01-387I02.TJ (MSMg01no387_i02.g1)
ACCAG490222AG490223
length791739
length of high quality
(start - end)
204 (70 - 273)456 (83 - 538)
definitionCHROMAT_FILE: MSMg01no387_i02.b1 PHD_FILE: MSMg01no387_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:34 2005CHROMAT_FILE: MSMg01no387_i02.g1 PHD_FILE: MSMg01no387_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGTTGCACAACTGAATGGCTGAGAAGCACCTGAAAAAATGTGC
AGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCACGACATCAGTCTGGATATTCCTCAGAA
AATTGGACATTGTACTACCGGAGGATCCCACAATACCTCTGCTGGGCATA
TATCCAGAAGATGTCCCAACCGGTAAGGACACATGCTCCCCTATGTTCAT
AGCAGTCTTATTTATAATACCCAGAAGTTGGAAAGAACCCAGATGCCCCT
CACCAGAGGAACGCATACCATTACTGCGGCACCTTTACCCCATGGAGTAC
TACTCCGCTATCACCCATAACGAATTCACGACCCTCTTACCCTCCTGCTC
GGCCCTTGTTGGCCCCCTCCCCGCCCTTGCCCTTACCCCCCACTCTCCCA
CTCCCACGACTCCTTCCCCCCCCCCCTTCCGGTTCCCCCCTCCTACCCCC
CTTATACCCCGTACACTCTTTACCACCTTTTCCCTTTCCCCCTCCCACCT
CTCCTCTTCACTCCTTTTACCCCCTTTCCCCTCCCTCTTTTCGCCTTATT
TATTTTTTGCCACCCGCCCCCCCCCCTCCTTTTGTCTAGCT
TAAACNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGAATTTTACT
TTTGAGCCATTCTCTAGCATAAGCAAGCAAACAGAACATATTCTTATAGA
AATCTCAGTGTAGTGGTATGAAGCGCATTGCACATCCGTAGCGCTGAAGT
ATCAGCTCCATTCCTGGGCTGATTCCCCCCCCCCCCCACTGTGGTTGTAT
TGTTCTGATTTCATGTACACCAGAGTAACTGATTTGTTTTGTTTTGTTTT
GTTTTCTTGTGGAGTTAACACCAAATAAAAATTTCAAAAATGTTAAAAAA
AAAGAAATATCAGTGTAATGATTCATAAAAAATGTAGATTTCACCTAATA
TGGTTTCAGATTATTATATACATGTCAGGCAAAGGGGACTGTTGTGGAAA
GTATGGGGGTCTAGCAGAATTGTGTGTATAGACAGGACAGCCCCTCTTAG
ATTTATTCTGGGCATTTCCAAAGTATCTGGAAATCTCATCTTAGTTATTT
ATTAAATTCTTGAAAAGTTATTCCTCCATAAATGTAAGCTTGCCCATTTC
AGTAAGAGTCTGAATATCTTTATTAAACTAAACTTATTTTCAATATCTCA
CCGCTTTCTAAATCCGACCTTGTCAATTGGACATTGAGTACATAAGGGCA
CGCTTATCTCATAGCTATGATCGCACATTCTCGCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i02.g1 MSMg01no387_i02.g1 CHROMAT_FILE:
MSMg01no387_i02.g1 PHD_FILE: MSMg01no387_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:34 2005
         (456 letters)



>mm_chr6_66731642_66732497
          Length = 856

 Score =  785 bits (406), Expect = 0.0
 Identities = 428/438 (97%), Gaps = 5/438 (1%)
 Strand = Plus / Minus

                                                                       
Query: 19  tttgagccattctctagcataagcaagcaaacagaacatattcttatagaaatctcagtg 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tttgagccattctctagcataagcaagcaaacagaacatattcttatagaaatctcagtg 797

                                                                       
Query: 79  tagtggtatgaagcgcattgcacatccgtagcgctgaagtatcagctccattcctgggct 138
           ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 796 tagtggtatgaagcgcattgcacatccatagcactgaagtatcagctccattcctgtgct 737

                                                                       
Query: 139 gattcccccccccccccactgtggttgtattgttctgatttcatgtacaccagagtaact 198
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gattccccccccccc-----gtggttgtattgttctgatttcatgtacaccagagtaact 682

                                                                       
Query: 199 gatttgttttgttttgttttgttttcttgtggagttaacaccaaataaaaatttcaaaaa 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttgttttgttttgttttgttttcttgtggagttaacaccaaataaaaatttcaaaaa 622

                                                                       
Query: 259 tgttaaaaaaaaagaaatatcagtgtaatgattcataaaaaatgtagatttcacctaata 318
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tgttaaaaaaaaagaaatatcagtgtaatgattcataaataatgtagatttcacctaata 562

                                                                       
Query: 319 tggtttcagattattatatacatgtcaggcaaaggggactgttgtggaaagtatgggggt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtttcagattattatatacatgtcaggcaaaggggactgttgtggaaagtatgggggt 502

                                                                       
Query: 379 ctagcagaattgtgtgtatagacaggacagcccctcttagatttattctgggcatttcca 438
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ctagcagaattgtgtgtatagacaggacagcccctcttagatttattctgggtatttcca 442

                             
Query: 439 aagtatctggaaatctca 456
           ||||||||||||||||||
Sbjct: 441 aagtatctggaaatctca 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)