BAC Information

Click to search

BAC

Clone NameMSMg01-387L04
Chromosome6 (Build37)
Map Location 29,131,490 - 29,131,869
singlet/doubletsinglet
Overlap genenone
Upstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik
Downstream geneImpdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387L04.T7 (MSMg01no387_l04.b1)MSMg01-387L04.TJ (MSMg01no387_l04.g1)
ACCAG490370AG490371
length782263
length of high quality
(start - end)
380 (79 - 458)---
definitionCHROMAT_FILE: MSMg01no387_l04.b1 PHD_FILE: MSMg01no387_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:49 2005CHROMAT_FILE: MSMg01no387_l04.g1 PHD_FILE: MSMg01no387_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATACCTCTTATCTTACTCCCTCCCAAAACCCTATTAAAATGTTA
TTAAGAAGACCTCAGAGTCAATTGATAACTCTTCAGGGATGGGGAGAGCA
GGAAGGGGCTCGAGCAACAGGGCCTTTGATGCAGGATGGCTGGCAGGGGC
ACAGTGACTGACTTAGCCACCCCGAGCAAAAAGCTGTCTCCACCTGGCAG
AAAGGAAGCTCAGAGCCAAGTTGATTTACATCACACTGTTCTCAGAAGCT
GGCAATCCAAATGCCTCAGGAACAGTGGGAGCATAGGCTAAAGGAAAGAC
CAATCAAAGCACAGTTCAACTCCTAGGTCTCTTCCCTAACTCCAAACCAC
CAGGAAGCGGGCCATCCATCCCATAACCAGCAGGACCTGTGGGATTTTCC
TTTGAGAAGAAGATGTGCTACACTGGCAGAGCCTCGGGCATCCTCTGAAC
TGAGTCTTAGCTAGGGCTTTGCTGCTGTGAGCAGACCCCATGACCCAAGC
CACTCTTATAAGAACCCCACTTACTTGGGGCCGGGCCTACCAGCCCATAG
GGTCCGTCCATTTTCCCCCCCGTGGGTAGCCCCGCCTCTTCCCCCCCCTC
TCTGGCCCCATCCCTTTACCAAATCTCCTCTTCTCCCCCCGACGGTCCCT
CTTATAAACCATTACCCCCGTCCTCCCTTGCATATCCCTTTTTTATTCCT
TTCCCCCCCGCGCCTTCCCCATCCCCCTCACA
CAAAAAGAAAAGCCCCCACGTGAAGACGACGGGGCTTGGCCCCACTCAAG
AATGGGCAAATTCTACCACTATTCCTCTACGTCCCCCCCTTTATCATCAC
CGCTTCCTAGTAGAAGGTCCACCTCCCATCCCAACCCCATTCCATCATCC
TTGACCCCTACTCTCCCCCACCCATTTANGGCTNGGCTACGACTGACTGT
CATGTACTAGATCGATACTTAGCTACTAATCTACTCAGCTGTGCATCGAT
CGTGAATTGATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_l04.b1 MSMg01no387_l04.b1 CHROMAT_FILE:
MSMg01no387_l04.b1 PHD_FILE: MSMg01no387_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:49 2005
         (380 letters)



>mm_chr6_29131290_29132069
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaaaccctattaaaatgttattaagaagacctcagagtcaattgataactcttcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaaaccctattaaaatgttattaagaagacctcagagtcaattgataactcttcaggg 260

                                                                       
Query: 61  atggggagagcaggaaggggctcgagcaacagggcctttgatgcaggatggctggcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggggagagcaggaaggggctcgagcaacagggcctttgatgcaggatggctggcaggg 320

                                                                       
Query: 121 gcacagtgactgacttagccaccccgagcaaaaagctgtctccacctggcagaaaggaag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacagtgactgacttagccacccagagcaaaaagctgtctccacctggcagaaaggaag 380

                                                                       
Query: 181 ctcagagccaagttgatttacatcacactgttctcagaagctggcaatccaaatgcctca 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagagtcaagttgatttacatcacactgttctcagaagctggcaatccaaatgcctca 440

                                                                       
Query: 241 ggaacagtgggagcataggctaaaggaaagaccaatcaaagcacagttcaactcctaggt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaccgtgggagcataggctaaaggaaagaccaatcaaagcacagttcaactcctaggt 500

                                                                       
Query: 301 ctcttccctaactccaaaccaccaggaagcgggccatccatcccataaccagcaggacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttccctaactccaaaccaccaggaagcgggccatccatcccataaccagcaggacct 560

                               
Query: 361 gtgggattttcctttgagaa 380
           ||||||||||||||||||||
Sbjct: 561 gtgggattttcctttgagaa 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)