BAC Information

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BAC

Clone NameMSMg01-387P04
Chromosome6 (Build37)
Map Location 107,422,903 - 107,423,261
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387P04.T7 (MSMg01no387_p04.b1)MSMg01-387P04.TJ (MSMg01no387_p04.g1)
ACCAG490561AG490562
length784790
length of high quality
(start - end)
380 (45 - 424)342 (84 - 425)
definitionCHROMAT_FILE: MSMg01no387_p04.b1 PHD_FILE: MSMg01no387_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:09 2005CHROMAT_FILE: MSMg01no387_p04.g1 PHD_FILE: MSMg01no387_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCAAATATATTACCCCTACCATTCTCATCCCAAAAGGACCAAAGCA
TTCAAAGAGATTAACACAGTGCCTGACACACAGCTTCAAGGCACTAAATG
CTTTTACTATCTTTAAAGTAGTGATATATATCCTTGATGCTCCATATTTT
GTGGTTTTGCTTCCTAGAGGAAACACTATGGTAGGTAGTGGTTTTCATCA
GTTAGAAAGGACATATTTTTCTTGACATGATAAATTGATGCTTTTATTAT
ATTCTTCACCAAAGAATTGCATCTTTGAATAAAGTTTACTTTTATTTTCA
TATTGCCACCTATTTGCAGCATGATAAAGTCACTTTGAATGAATACCATA
TTCTCAGCAAGTAGATAAACATTAAAGGTTAAACACTGGAGCAATTTTAA
AAAGTTTAAGAACGGCTTCTCTTAGATTATCCCCCAATTACAGCAATACA
AACCCTAGCATGGAATTGTAACCGTTTTCATCCAACCCTGCTGATACCGA
TAATTATTTATAATACTGCACAAAACCTCCAACCCTAATAATACGCCCTT
CCTACCCCCTGACTCGGCGCGTTTTTTCCCCCACTTCTCCCATCCCCCAA
TTTTTGACCCCCTCCGTATCCCTCTCTTATTCCCCCCGCCGTTTTCTCCC
CCCGCAAAAGACATAAAACCTCCTCCCCCATCTCCTTTCTTTTCTTTATT
ATATTTTTACCCCCCCCCCATCACTCATCATAAC
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTAGCTGATGAGA
AAGAAAAGGATAGAGAGAAGGTCATGTATACCTCCCCACACTCTGGTTGG
GCCCGACCACCTATTTCACCTTTTTCATAAGTGTACAGATATACTTATAT
ACATACACATAGGTATGCATGTACATACATATAGACAGAGATGCATACAT
TTAGTGGATGGAGCAGAGACCTAAAAGCCACACAGTATTTTTCTCTTAGC
CTTATTTCACCTTTTCACACAAAAGTTCTTCATAAAATTACCTCATAGAT
GAAGTGTTACACAAAAGGGGAGTTACAGAAGAATATCAATAAGTTCAAAG
CAGTGTTTCATTCTGTAAGCTCATTACAACNCCAAAGCAACAGTTTCACA
TGGCCTTGCTGTATCATAGTGGACACCTGTGGCTTCTTCCTTGGACCTAA
CCTAGGTGAATGTTTTTCCCTGATCATAAATCTGTTTCAAGCCCCGCTCT
CTTCTTAGTGTAAATCTTGAACTCCCATCGCTTTTCTTATCAACGACCCT
TCATTTTCTATTCCTATGAGGACCGTTTCCTTTCCCCCCTCTTATTTTCA
CCATTTACTAATTTCTCGGACATACCCACCCGTCACTGCTACCGGCCCAC
GCTTCTCTATCTTTTTAAATCCTCCCCACCCCTCCGCATTAGTCTCCCTC
ACATCCTTCTTTATATCCTTTGGTCCTCTTTTCCTCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_p04.b1 MSMg01no387_p04.b1 CHROMAT_FILE:
MSMg01no387_p04.b1 PHD_FILE: MSMg01no387_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:09 2005
         (380 letters)



>mm_chr6_107422683_107423461
          Length = 779

 Score =  615 bits (318), Expect = e-180
 Identities = 354/374 (94%), Gaps = 15/374 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaatatattacccctaccattctcatcccaaaaggaccaaagcattcaaagaga 66
           |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 221 gaattcaaatatatga-gcctaccattctcatcccaaaaggaccacagcattcaaagaga 279

                                                                       
Query: 67  ttaacacagtgcctgacacacagcttcaaggcactaaatgcttttactatctttaaagta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaacacagtgcctgacacacagcttcaaggcactaaatgcttttactatctttaaagta 339

                                                                       
Query: 127 gtgatatatatccttgatgctccatattttgtggttttgcttcctagaggaaacactatg 186
           |||||||||||||             |||| |||||||||||||||||||||||||||||
Sbjct: 340 gtgatatatatcc-------------tttt-tggttttgcttcctagaggaaacactatg 385

                                                                       
Query: 187 gtaggtagtggttttcatcagttagaaaggacatatttttcttgacatgataaattgatg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtaggtagtggttttcatcagttagaaaggacatatttttcttgacatgataaattgatg 445

                                                                       
Query: 247 cttttattatattcttcaccaaagaattgcatctttgaataaagtttacttttattttca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttttattatattcttcaccaaagaattgcatctttgaataaagtttacttttattttca 505

                                                                       
Query: 307 tattgccacctatttgcagcatgataaagtcactttgaatgaataccatattctcagcaa 366
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tattgccacctatttgcagtatgataaagtcactttgaatgaataccatattctcggcaa 565

                         
Query: 367 gtagataaacatta 380
           ||||||||||||||
Sbjct: 566 gtagataaacatta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 779
Length adjustment: 9
Effective length of query: 371
Effective length of database: 770
Effective search space:   285670
Effective search space used:   285670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)