BAC Information

Click to search

BAC

Clone NameMSMg01-388P13
Chromosome6 (Build37)
Map Location 48,326,483 - 48,326,823
singlet/doubletsinglet
Overlap genenone
Upstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P13.T7 (MSMg01no388_p13.b1)MSMg01-388P13.TJ (MSMg01no388_p13.g1)
ACCAG491337AG491338
length739761
length of high quality
(start - end)
345 (63 - 407)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no388_p13.b1 PHD_FILE: MSMg01no388_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:25 2005CHROMAT_FILE: MSMg01no388_p13.g1 PHD_FILE: MSMg01no388_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTT
AAGAATCCCCTGGAAGCAGGGGTAGGCAGGCTGCTTCCTGTGGGCAGGAA
GTGAGGGTTGAGCACGAGAAGGCCTGGGACCCAGCACAGCAGCACTGTGA
GAAGTGTTCCTAGGGTACAGCCTAAAGCCACCAGTAAGACACAGAATGTG
TCCTACCAGGAAGGAGGAAGAGCTGTGATCTTAAGGAAGGACAAATGGGA
ACCCAGGAGAAAGAAAACCAACCCTGGGACCTTCAGCTGACTAATTAATA
GCTTCAGCCCTGTGTTTGTAGTTTTCTTTTCTTTTCCTTTTTTCCTTTTG
TAGTTGAAAAGAACCTTTATTTTTATTGAAAGGTGAATATAAATTAAGTA
AAATACCCACCCCCCCTAATCACTGCATTGTCAAAAGTGTTCCAATATCA
CCAGAAACTAATTTTAAAATACGGTTTATTGGCCGGAACAAGCCCATAAA
AATTATTAATTTACCAATAATAGAAGTTAAAGGCTAAGCCCAGGACCAGA
TGGGTTTAGTGCAGAGTTTCTACCAGACCCTTCAAGAAGATCTAATTCCA
GTTCTGCACAAACTATTCCCCAAAATAGAAGTAGAGGGAACTCTCCCCAA
CTCTTTCCATGAAGCCCCAATTACTCTGATCACCCTAACCCCAGAAAGAT
CCACCCCAGATTAAGAACTTCTTACCACTTTTCCTTATG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTAAGAATAGTTGGTGGAA
GGAAACAGTATTTAACTAGAGGCAGATGGTGGGCCCCTCCTATGTACAGA
GGACCCTATAAGTTAAGAACAACTGCAGGACCTTTACCTTATACAGGGGC
CTATGATGAGAATGGAGATGGATGGGTAAATATTAATGGAGAGAGAATTT
TATACTATACATTAAATTTTATGGAGTGACTTGCCAGAGCAAGGCCTCCT
TGGTGTGTGATGACAAAGAGAATTTTTAGTGCAATCATAAGACAAATATA
TAGCTTTTGGAGAAATTATAAGAGCCTGTTCTCTAAAGAGAGTTTTGTAG
AAGCAGTCACAAAATTTCCAAATTAGCCAGAAGGCCCATAGGATTGTGAA
GTTGGTATAAGTTAAAGTTAAACTTCTGACTATTTTGTAAGCCTTGGCTG
GCAGAATGCTAAGCCTAGGCTGACCACTGTCTGGGTACCAAGAGGGTTCT
CAAGAGCTGCTTCCTGTTTTATTCTTCTGGNTTCAGGGTAACTCGTTAGT
GCTTATCTTTGGAGTATGAGATGGTCCCTGCAATGCCTGTACCCAAAAAT
TGTGTTCCCTGATAAAGGGGACATAACCCCCCCCTGAAGGGAAAGCAAAT
ACCCCTCCCTTCCACCTCTCCTTGGGTTTGTGTCTGGACCTGCCCGCAAC
CCTTCCTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p13.b1 MSMg01no388_p13.b1 CHROMAT_FILE:
MSMg01no388_p13.b1 PHD_FILE: MSMg01no388_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:25 2005
         (345 letters)



>mm_chr6_48326283_48327025
          Length = 743

 Score =  644 bits (333), Expect = 0.0
 Identities = 340/343 (99%), Gaps = 2/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcaggggtaggcaggctgcttcctgtgggcaggaagtgagggttgagcacgagaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gaagcaggggtaggcaggctgcttcctgtgggcaggaagtgagggttgagcaggagaagg 260

                                                                       
Query: 61  cctgggacccagcacagcagcactgtgagaagtgttcctagggtacagcctaaagccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggacccagcacagcagcactgtgagaagtgttcctagggtacagcctaaagccacc 320

                                                                       
Query: 121 agtaagacacagaatgtgtcctaccaggaaggaggaagagctgtgatcttaaggaaggac 180
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaagaca--gaatgtgtcctaccaggaaggaggaagagctgtgatcttaaggaaggac 378

                                                                       
Query: 181 aaatgggaacccaggagaaagaaaaccaaccctgggaccttcagctgactaattaatagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatgggaacccaggagaaagaaaaccaaccctgggaccttcagctgactaattaatagc 438

                                                                       
Query: 241 ttcagccctgtgtttgtagttttcttttcttttccttttttccttttgtagttgaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcagccctgtgtttgtagttttcttttcttttccttttttccttttgtagttgaaaaga 498

                                                      
Query: 301 acctttatttttattgaaaggtgaatataaattaagtaaaata 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acctttatttttattgaaaggtgaatataaattaagtaaaata 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 743
Length adjustment: 9
Effective length of query: 336
Effective length of database: 734
Effective search space:   246624
Effective search space used:   246624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)