BAC Information

Click to search

BAC

Clone NameMSMg01-390C11
Chromosome6 (Build37)
Map Location 20,399,769 - 20,400,212
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040838, Kcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C11.T7 (MSMg01no390_c11.b1)MSMg01-390C11.TJ (MSMg01no390_c11.g1)
ACCAG492237AG492238
length745737
length of high quality
(start - end)
451 (82 - 532)534 (84 - 617)
definitionCHROMAT_FILE: MSMg01no390_c11.b1 PHD_FILE: MSMg01no390_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:59 2005CHROMAT_FILE: MSMg01no390_c11.g1 PHD_FILE: MSMg01no390_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCCTTATAATTTGGGGNCGCTAAAGAATCACTATATTGAGACGAT
CCGCGGAATTCAGCACACTTGTGTCAGAAAATGGAGTGGATATTGATTGT
GCCATTCCATAAATGGACTTAGCAACATATGAAGAATGAAGGGTGAAATG
ATGAATCAGCTACTGTGTATCTGCCTTTTCTGCAAAGGGCATGTTTTTGG
CTGATCTCATCATTAATATCAGATTTCTCATTCCTTCAACTTTTGCATTT
GAGTTGCATCAGAAGCACTCCAGGGAACTGTCAGACTGCTGGCTCTTGGA
CTGGGGTACACAACCTGTTGTTTTGATCTTTTGGGATGTATACTGAGCAG
ATATATTTTCCCTGCCTCTCTAACTTGGACATGGCTACTGTAATTTTAGT
TATCCTGTGTTGTTGTTGAACTAATATGTAGTGTGTGTGTGTGCTCTCAG
CTTATTCTCGTGAGGTCTGCGAAATTCATTAAGCTTTTCATCTGAATTAT
AATAACCAATTTCTAGGGTGGGCAGTGTCATCTTTGCATAACAAGAGTTT
ATATTTCATACATCTTTGGAAATATTTATCTTACCTTAGATTTCCCATCC
CTGGATTGTTTTGCGACTTGAGGCCTCCCTATGCTCCAGAAAATATGCTA
TTAAATGGATTATGCCCCACTTTGTTATAACGATTTTGGTTGCATTCCAT
TCCAAGATCCGTACCCTAAGTAAAAGAGAAAACCCGCTTATATAG
CCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCA
AATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAATTCAAAACAACCCTGAGATTCCACTTCACTCCAGACAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGAGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCAGTTCCTCAGAAATTTGTTCATAGGACTACTG
GATGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAAC
CGGTAAGAAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTATATTTACACAATGGAATACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCA
TCAAGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCA
TGGATAAGTGGATATTAGCCCCGAAACTTAGGATACCCCAGATATAAGAT
ACCATTTGCTAAACACATGAAACTCAAGAAGAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c11.b1 MSMg01no390_c11.b1 CHROMAT_FILE:
MSMg01no390_c11.b1 PHD_FILE: MSMg01no390_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:59 2005
         (451 letters)



>mm_chr6_20399462_20400312
          Length = 851

 Score =  779 bits (403), Expect = 0.0
 Identities = 436/451 (96%), Gaps = 7/451 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagtggatattgattgtgccattccataaatggacttagcaacatatgaagaatgaag 60
           |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 751 tggagtggatgttgattgtgccattcaataaacggacttagcaacatatgaagaatgaag 692

                                                                       
Query: 61  ggtgaaatgatgaatcagctactgtgtatctgccttttctgcaaagggcatgtttttggc 120
           |||||||||||||||||||||||||||||| |||||||||       |||||||||||||
Sbjct: 691 ggtgaaatgatgaatcagctactgtgtatccgccttttct-------gcatgtttttggc 639

                                                                       
Query: 121 tgatctcatcattaatatcagatttctcattccttcaacttttgcatttgagttgcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgatctcatcattaatatcagatttctcattccttcaacttttgcatttgagttgcatca 579

                                                                       
Query: 181 gaagcactccagggaactgtcagactgctggctcttggactggggtacacaacctgttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaagcactccagggaactgtcagactgctggctcttggactggggtacacaacctgttgt 519

                                                                       
Query: 241 tttgatcttttgggatgtatactgagcagatatattttccctgcctctctaacttggaca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tttgatcttttgggttgtatactgagcagatatattttccctgcctctctaacttggaca 459

                                                                       
Query: 301 tggctactgtaattttagttatcctgtgttgttgttgaactaatatgtagtgtgtgtgtg 360
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 458 tggctattgtaattttagttatcctgtgttgttgttgaactaagatgtagtgtgtgtgtg 399

                                                                       
Query: 361 tgctctcagcttattctcgtgaggtctgcgaaattcattaagcttttcatctgaattata 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgctctcagcttattctcctgaggtctgcgaaattcattaagcttttcatctgaattata 339

                                          
Query: 421 ataaccaatttctagggtgggcagtgtcatc 451
           |||||||||||||||||||||||||||||||
Sbjct: 338 ataaccaatttctagggtgggcagtgtcatc 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)