BAC Information

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BAC

Clone NameMSMg01-391D22
Chromosome6 (Build37)
Map Location 141,398,147 - 141,398,549
singlet/doubletsinglet
Overlap genePde3a
Upstream genePlekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D22.T7 (MSMg01no391_d22.b1)MSMg01-391D22.TJ (MSMg01no391_d22.g1)
ACCAG493064AG493065
length772777
length of high quality
(start - end)
406 (62 - 467)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no391_d22.b1 PHD_FILE: MSMg01no391_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:23 2005CHROMAT_FILE: MSMg01no391_d22.g1 PHD_FILE: MSMg01no391_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCCGCGGAATTCTACA
GGCCTCTTATACATGTGCACACACATGAGCAAGTAAATACACACATGCAT
GCATATAAATAAAAAATTGTTGAGAGAGAGAGAGAACAAGTGAGAAAAAT
GTACATATTCATGATTCTTTCTTTACATGTATAGTCATGTTCAGTTCAGT
AACAACAGCGCTGGTAATACGTAATATTTAGTAAGCATGAATTTCAGGCT
AAACAATTGCTAGGACTCTTTTTTATGGGATTTTCATTTCACATATTTAT
TGTACTGGGTTACAGGGGTATACTTTGTATTATGTGTGTCCCCAATACTC
CCCTGCATGGTCCTGGGTCACAGGGATATACTTTGCGTCATGTCTGTCCC
GTGTACTCCCCGCCCCTTCCCTGTCAACCTGCTCCCATTATTCACTTACT
TCATGTCATTTGCACATCTGACTTTATATTTCTGCATTCGTCATGGTGAG
ACTTTACCGATACTCCTACACATGGCTTCCTTTACCTGTCAAACCATAGG
TCCCATTACCAAGCCCACTTTGGTGCCGCCCAACACACGGTTCCAGCCCC
ACTCGTATTTTTCTATCTGCCCCCCATTAAATTTTCCCCCCCCCCCCCCC
CCCTTTTTTTATCTTTGCACGCCCCCCGTGCCCCCCCTTATCTAAAATTC
TCCCACCCCCCAACACCCATATACGTCCCCCCCCTTTATTTAATTCTCCC
CCTCCTCTTTCTCTTACCCCTC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTAACTCTGTACCCCATTTTTTA
ATTGGATTATTTAGATTATTCTTAACTAGCTTCTTGAGTTCTTTATAAAT
GTTGGACATTAGCCTTTTGTCAGATGGAAGTTTGGTGAAGATCCTTTGTC
AATCTTTTGGGTTCTGTGATGGTTTATATATGCTCAGCCCAAGGAGTGGC
ACTATTAGAGGGTGTGGCCCTGTTGGAGTAGGTGTGTCACTCTGGGTGTG
GGCTTTAAGACCCCAATCCTATCTGTCTATTGGGCAGTATTCTACTAGCA
GACTTCAGATAATGATGCAGAACTCTCAGCTCCTCCTGCGCTATGCCTGC
CTGGATGCTGCCACGCACCCATCTAGATGATAATGGACTGAACTTCTGAA
CCTATAAGGCAGGCCCACTTAAATGTTGTCCTTATAGGAGTTGCTTCGCT
CATGGCGCTTGCTCCTCGCCTTACTACCCCTCCTACTACGTCGCCTTTTT
GCCCCATTGACTGTTTTCTCCCGATTTCTCACCCTTTGTTTCTTTCTGCA
GCTCCTCCCCCCCCTCTTTGCCTCCTTTCTCCCCTTTCGTCCCCCCCTCC
TACATTCTCCCCTCTTCACCTCCCCTTTCCCGTTCTCTTTTTCTCCTCCC
CTATCCCTTCTCCTTTTTCTCTTTCCCCTTCCTTCCCTCTCCCCTCCTCC
CTTTCATCTTGCTCCCCCTCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d22.b1 MSMg01no391_d22.b1 CHROMAT_FILE:
MSMg01no391_d22.b1 PHD_FILE: MSMg01no391_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:23 2005
         (406 letters)



>mm_chr6_141397947_141398752
          Length = 806

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgcacacacatgagcaagtaaatacacacatgcatgcatataaataaaaaattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgcacacacatgagcaagtaaatacacacatgcatgcatataaataaaaaattgtt 260

                                                                       
Query: 61  gagagagagagagaacaagtgagaaaaatgtacatattcatgattctttctttacatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagagagagagaacaagtgagaaaaatgtacatattcatgattctttctttacatgta 320

                                                                       
Query: 121 tagtcatgttcagttcagtaacaacagcgctggtaatacgtaatatttagtaagcatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcatgttcagttcagtaacaacagcgctggtaatacgtaatatttagtaagcatgaa 380

                                                                       
Query: 181 tttcaggctaaacaattgctaggactcttttttatgggattttcatttcacatatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaggctaaacaattgctaggactcttttttatgggattttcatttcacatatttatt 440

                                                                       
Query: 241 gtactgggttacaggggtatactttgtattatgtgtgtccccaatactcccctgcatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtactgggttacaggggtatactttgtattatgtgtgtccccaatactcccctgcatggt 500

                                                                       
Query: 301 cctgggtcacagggatatactttgcgtcatgtctgtcccgtgtactccccgccccttccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 501 cctgggtcacagggatatactttgcgtcatgtctgtcccgtgtactccctggcccttccc 560

                                                      
Query: 361 tgtcaacctgctcccattattcacttacttcatgtcatttgca 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcaacctgctcccattattcacttacttcatgtcatttgca 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)