Query= MSMg01no391_i05.b1 MSMg01no391_i05.b1 CHROMAT_FILE:
MSMg01no391_i05.b1 PHD_FILE: MSMg01no391_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:45 2005
(496 letters)
>mm_chr6_105501428_105502324
Length = 897
Score = 640 bits (331), Expect = 0.0
Identities = 465/555 (83%), Gaps = 78/555 (14%)
Strand = Plus / Minus
Query: 1 aattctaaaagatctccgaaaggctcaggttttttctgaccaaagtcaaaaaagctgctt 60
||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 554 aattctaaaagatttctgaaaggttcaggttttttctgaccaaagtcagaaaagctgctt 495
Query: 61 -aaaaaaacaaaaaccaaaaag-------------aaacaaacaaaacaaaaccttggat 106
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 aaaaaaaacaaaaaccaaaaagaaacaaacaaaacaaacaaacaaaacaaaaccttggat 435
Query: 107 cttttgaccaagtcaaaaatcctgttaggaaaaaaaaaaa-tctaaggtaattcttgggt 165
|||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 434 cttttgaccaagtc-aaaatcctgttagaaaaaaaaaaaattctaaggtaattcttgggt 376
Query: 166 tttccaatcaaaatcagaaagccagaaaaaaattctgaaagagtttgctctctgggtttt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttccaatcaaaatcagaaagccagaaaaaaattctgaaagagtttgctctctgggtttt 316
Query: 226 ccaattaaaatcagagatcttgttag-aaaaaaattc------------tct-ctctcca 271
| |||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 315 ctaattaaaatcagagatcttgttagaaaaaaaattctcgaaagctgtttctgctctcca 256
Query: 272 gacatctccaggccgcttagctctccttggtgaaaattctaaagaattgttccagcaatt 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 255 gacatctccaggccgcttagctctccttggtgaaaattctaaagaattgttccagctttt 196
Query: 332 ttgctagctcatctcatgctgatcaaaagcacaggttt---------------------- 369
||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttgctagctcatctcatgctgatcaaaagcacaggttttatatatatatatatatataaa 136
Query: 370 ----------------------tatatatatat--atactcagttatttattcctgtttc 405
||||||||||| ||||||||||||||||||||| |||
Sbjct: 135 tataaatatatatatatatatatatatatatatgtatactcagttatttattcctggttc 76
Query: 406 ccttttgataagcctatggatcagtatcctgtgacactagccccttaaagtactctaaaa 465
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ccttttgataagcctatgaataagtatcctgtgacactagccccttaaagtactctaaaa 16
Query: 466 aaaaattgtgaaaga 480
||| || |||||||
Sbjct: 15 aaa--ttatgaaaga 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_i05.g1 MSMg01no391_i05.g1 CHROMAT_FILE:
MSMg01no391_i05.g1 PHD_FILE: MSMg01no391_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:45 2005
(505 letters)
>mm_chr6_105326761_105327665
Length = 905
Score = 924 bits (478), Expect = 0.0
Identities = 498/510 (97%), Gaps = 10/510 (1%)
Strand = Plus / Plus
Query: 1 aattccctatattttatttgatattaccaagaaactgacttcatagaatcacatgaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccctatattttatttgatattaccaagaaactgacttcatagaatcacatgaatct 260
Query: 61 cgttactttttattacaatgaaagaaaatttatttttgtaatatctcttgagtatatttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttactttttattacaatgaaagaaaatttatttttgtaatatctcttgagtatatttt 320
Query: 121 cttaaaaaatcaaatagaaatcattctattttagtctatttcatcatgtgagtttgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaaaaatcaaatagaaatcattctattttagtctatttcatcatgtgagtttgtttt 380
Query: 181 cattcaattgactatttataatatattccaaagaaggtctctaagtttttatcctaaagt 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cattcaattgactatttataatattttccaaagaaggtctctaagtttttatcctaaagt 440
Query: 241 ttaaaatt-----tttttttttcattttgaaaagaacaaaccagatagaagaatgaataa 295
|||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaattggagatttt-----cattttgaaaagaacaaaccagatagaagaatgaataa 495
Query: 296 gtctctaattgttaaactacaaagtatatgatgtggttaacctgcctatttagatggaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtctctaattgttaaactacaaagtatatgatgtggttaacctgcctatttagatggaaa 555
Query: 356 gttattataaataaacatattttaatgatttcatggtattgttttgcatcaatttgcatg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gttattataaataaacatattttaatgatttcatggtattgttttgcatcaatttgcatg 615
Query: 416 cttataaaatatattctgaaaaaatagaaatatttaaatagatataaatgtgcatttgaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttataaaatatattctgaaaaaatagaaatatttaaatagatataaatgtgcatttgaa 675
Query: 476 gtcatttattaatatatggaaaataattct 505
||||||||||||||||||||||||||||||
Sbjct: 676 gtcatttattaatatatggaaaataattct 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
