BAC Information

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BAC

Clone NameMSMg01-391P07
Chromosome6 (Build37)
Map Location 103,177,213 - 103,177,388
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn3
Downstream geneChl1, LOC666141, LOC100043345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391P07.T7 (MSMg01no391_p07.b1)MSMg01-391P07.TJ (MSMg01no391_p07.g1)
ACCAG493605AG493606
length765769
length of high quality
(start - end)
177 (62 - 238)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no391_p07.b1 PHD_FILE: MSMg01no391_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:20 2005CHROMAT_FILE: MSMg01no391_p07.g1 PHD_FILE: MSMg01no391_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGAGCTAAACGACTCCCACATACACACCACCGCGGAATTCTGAGTATTA
CTCTACACAGACATTGTCACACCCATGGACACTTTTGCAATATAAAATTG
ATGCAAATGAATAACACCCTACTAAGTTAAGTTTGAGGCTTTCTTTAATG
TTTTATATTCAGATCACAGTGTAAATGTGCTTGCAGACTCTTCAGTGAGC
ATGTGGATGTCATTATATTATCTTTAACCATTTATTATTAAGAATAGTAT
AGTGAAGAAAACAAAGAATTAAAGAACTCAGGACAAATAATTGAGGATGG
AATTAATATTCATAACAGAATCTCGATGAGTAGATTTGATTTATAAACAT
TTACTTTCTTGAGTCTGCTTAATCATTCCTCCCCTGGTGATAAATCACCC
CCCCCACCCCTTAATACTCTACATCCAATACTGACTCTTGTAGGGAACCT
GGGTCCCATGTTCCAGCATCTGCATGGGTGTGACGGCCTGCATATACTTG
CACCACCCCCTGACCCCCCCCGCAGTTGTGCCCCCTGTTTTATACCTGCG
ATTTGCCCGCCTCGCCCCCGCCCTTGCTCTTTTACTCCCCCCTCCCTCTC
CCTTCCTTCCTTTTTCTTTCTCTTTTAACACTCTCCCCCTCTCTCTTCCC
ACTTTTTTTTTCCCTCTTCCCTTCTCTTTTTCCCCCTCCCCCCTTCTTCT
CTCCCCCCCCTCCCTCTCTTTTCTCAATCCCCCCCCCCTCTATCCTACCC
TTTTCCTTTCCCCTC
NNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGG
ATGGATCTGGAGGATATTATTCTGAGTGAGGTAACCCAATCACAGAAGAA
CACACATGATATGCACTCACTGATAAGCAGATATTAGCCCAGAAACTTAG
AATATCCATGATACAATTTGCAAAACATATGAAACTCAAGAAGAAGGAAG
ACCTATGTGTGGATAATTTGCTCCTTCTTAATATGGGGAACAAAATACCC
ATGGAAGGAGTTACAGAGACTTGGTCCGTAGCTGAGATAGAAGGAACGAC
CATCCAGAGACTGCCCCACCCAGGGATCTATCACATATACAGCCATCAAA
CCCAGACACTATTGCACATGCCACAAAGATTTTGCTGACAGGACCCTGAT
ATAGCCTCTCTTGTGAGGCTATGCCTTGGCTGGCAAATACAGAAGTGGAT
GCTCATAGTCATCTATTGGATGGAACACAGGCCCTCCAATGACGGAGCTA
GAGAAAGCACCTAAGGAGCTAAAGGCTCTGCAACCCTATAGGAGGAACAT
TTATCTGAACTAACACGTACCCCCCCGAGTTGTGTCTCTAGTTGCGCATG
CCCCTTAACATGACCTAAACAGCCCCCTCCCCTAGGATAACCCTTTTCTC
TTCTTACCTACCTACCCCTCCTTTTTCCTGCAATTGCATGGCCCCCAACA
CCCAATTGACCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_p07.b1 MSMg01no391_p07.b1 CHROMAT_FILE:
MSMg01no391_p07.b1 PHD_FILE: MSMg01no391_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:20 2005
         (177 letters)



>mm_chr6_103177013_103177589
          Length = 577

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgtcacacccatggacacttttgcaatataaaattgatgcaaatgaataacacccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgtcacacccatggacacttttgcaatataaaattgatgcaaatgaataacacccta 260

                                                                       
Query: 61  ctaagttaagtttgaggctttctttaatgttttatattcagatcacagtgtaaatgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagttaagtttgaggctttctttaatgttttatattcagatcacagtgtaaatgtgct 320

                                                                   
Query: 121 tgcagactcttcagtgagcatgtggatgtcattatattatctttaaccatttatta 176
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 321 tgcagactcttcagtgagcatgtggatgtcattatattatctttaagtatttatta 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)