BAC Information

Click to search

BAC

Clone NameMSMg01-392B02
Chromosome6 (Build37)
Map Location 133,480,057 - 133,480,475
singlet/doubletsinglet
Overlap geneEG545884
Upstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
Downstream geneEG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B02.T7 (MSMg01no392_b02.b1)MSMg01-392B02.TJ (MSMg01no392_b02.g1)
ACCAG493691AG493692
length768755
length of high quality
(start - end)
190 (51 - 240)419 (70 - 488)
definitionCHROMAT_FILE: MSMg01no392_b02.b1 PHD_FILE: MSMg01no392_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:29 2005CHROMAT_FILE: MSMg01no392_b02.g1 PHD_FILE: MSMg01no392_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACATGGTGGGACTTATGGCTCCAGCTGCATATGTAGCAGA
GAATGTCCTAGTTGGTCATCAATTGGAGGAGATGTCCTTGGTCCTGTGAA
GGCTCTCAGCCCCAGTGTAGGGGAATGGCAGGGCCAGGAAGCAGCAGTGG
GTGGGTTGATGAATAGGGGAAGGGTAGAAGGGGGAAGCCCCCCCCCCCCC
CCCCCCCCNNCCCCCCCCCCCCCCCCCCNCCCCCCCCCCNNCCCCCNNCC
CCCCCCCCCCCCCCCCCCCCCCTTTCTCCCCCCCCCCCCCCCCCCCCCNN
NCCNCCCCCCCCCCCCCCCCCCCCCCCCCNCCNNCNCNCCCCCCCCCCCC
CCCCCCCCCCCNNCCCCCCCCCNCCCNCCCNCCCCCCCCCNCCCCCCCCC
CCCCCCCCCCNCCCCCCCCTCCCCCCCTNTCCCCCNCCCCCTCTTCCCCC
TCCCTCTTCCTCCTCCTCCCCCCCCCCCCTCCCTCTTCCCTCTGCCCCTC
TCCCCTCCTCTCCCTCCTTTCCCCCCCTCTCTCGTCCTTTTTCGTCCCCC
TTCTTCCCTTCCTTCCTCCTTCTCCCCCCCCCCCCTTCCTCTCGTTCCCC
TTTCTTCCCCTCCCTCCTTTTTCTCCCCCCCCTTTCTTTCCCCTCCTTTC
CGCGCGCCCCTCTCCCTCCCCCCGCCCCCCCCCCTTTTCCTTCTTTCCTT
TCCCCCCTTCCCCTCGCN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCACAACCAGAAACATCAGTATTAAGTCA
CTTTAGTTTCTACTCTCATTTCACAGTGGTGATTTGGGGTGGAAAGCAAA
TTAATCTCTTCTCCAGTTATGGAAGCTCTGTCTCAACTTCATTCAGTTGG
CTGACCTCAATAACGTCTCCATCATCAGGTTGGGAAATATTTACTTATAA
GCATAGAGAAATTATATTTACTCATCTATAAGACAAAGATATGATGTGAC
AACACAGTGAAACACTGACAGTCAAGCAGCATGAAAGGAAGATAGATTGT
GCTTACTGGGTATTGGTTGGACACCAGATGTATTATCATTGTTCAAATCT
AGAAATAAGGAATAGAATAAAGAGAAACTTTAGACCACAATCTTTGAGAG
TTTAGAGATGTCTGACAAAAAGTGACTTCCAGAGACAAATAATCACAACT
ATGCTCAACAGTTACTGTCTGAGATGCTCCTATAAATGTACAGGTATTTA
AGAGACTGTGCAAATACCTTGTGTTCTTATACTCCAGAACACAAACATAG
ATTTTTCATATTTTTAATTCCCCCAGAATAGCTATTATCATATTACCCCT
TATTAAAATTACTCTGAACTCCTTTAAGAAATACGCCCAACTCATTTTTT
TTCTCTAAATTCCCTTTTACCCTCCTGCAACCTTTCCCCTGTGTTTCTTT
CTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b02.g1 MSMg01no392_b02.g1 CHROMAT_FILE:
MSMg01no392_b02.g1 PHD_FILE: MSMg01no392_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:29 2005
         (419 letters)



>mm_chr6_133479857_133480675
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcacaaccagaaacatcagtattaagtcactttagtttctactctcatttcacagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctcacaaccagaaacatcagtattaagtcactttagtttctactctcatttcacagtgg 560

                                                                       
Query: 61  tgatttggggtggaaagcaaattaatctcttctccagttatggaagctctgtctcaactt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgatttggggtgaaaagcaaattaatctcttctccagttatggaagctctgtctcaactt 500

                                                                       
Query: 121 cattcagttggctgacctcaataacgtctccatcatcaggttgggaaatatttacttata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 499 cattcagttggctgacctcaataacgtctccatcatcaggttgggaaatatttatttata 440

                                                                       
Query: 181 agcatagagaaattatatttactcatctataagacaaagatatgatgtgacaacacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agcatagagaaattatatttactcatctataagacaaagatatgatgtgacaacacagtg 380

                                                                       
Query: 241 aaacactgacagtcaagcagcatgaaaggaagatagattgtgcttactgggtattggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaacactgacagtcaagcagcatgaaaggaagatagattgtgcttactgggtattggttg 320

                                                                       
Query: 301 gacaccagatgtattatcattgttcaaatctagaaataaggaatagaataaagagaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gacaccagatgtattatcattgttcaaatctagaaataaggaatagaataaagagaaact 260

                                                                      
Query: 361 ttagaccacaatctttgagagtttagagatgtctgacaaaaagtgacttccagagacaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttagaccacaatctttgagagtttagagatgtctgacaaaaagtgacttccagagacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)