BAC Information

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BAC

Clone NameMSMg01-392O04
Chromosome6 (Build37)
Map Location 74,386,315 - 74,386,655
singlet/doubletsinglet
Overlap genenone
Upstream gene4931417E11Rik, LOC100043338
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392O04.T7 (MSMg01no392_o04.b1)MSMg01-392O04.TJ (MSMg01no392_o04.g1)
ACCAG494315AG494316
length796767
length of high quality
(start - end)
234 (75 - 308)340 (71 - 410)
definitionCHROMAT_FILE: MSMg01no392_o04.b1 PHD_FILE: MSMg01no392_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:34 2005CHROMAT_FILE: MSMg01no392_o04.g1 PHD_FILE: MSMg01no392_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACACACGCATCCGC
GGAATTCCCTGGTTAATGTAAATTTAGTTTTAGAGAACTCTACACACTGA
TTTCCACAGTGGCCAGACCAGTCATTATTTCGTCCAAAGTATGGTCCTTG
TTGCCTTTCTTCTCTCCTGAATTTGCTTCTAGATGTTGAATTGTTCACTA
CCGTTCTGAACAAGATACGATGAAATCTCAAAATTTCATTGATTTGTGTC
TATTGATTACTAGAAACAATAAAGATATATATATATATATATATGTGTGT
GTCTGTGTGTGCCCCTCTCTCTTGCCTTTTNNNNNGGGGGGCGGCCGCCC
CCCCCCCCCTTTTTTTTTTCCCCCCCCTGGGGGAGGGGGGGCCTCCCCCT
TTTTTTTTTTTTTCCCCCCCCTTTTATCTTCCTTTTTTTCTTTTCCCCGG
TTTATCCTCCTCCCTTCCCTAATGCGCTCCTCCGTTTTTCCTTATTCTAC
TCCCTCTCCCTCTATTCCGCCTCGCCTTTCCCTCCTTCCCGCCTTTTGTG
CGGTTCTTTTCTTCTTTTCTCCTTATTTGTGTTATTCTCCCCTCGCCCCT
CTTTCCCCCCCTTTCTTGGTCTTTTTGCCCCCCCCTGTTCCCCCCCCCCC
CCCCTTTTTTTTTTTCTTTTCCTTCCCCCCCCTCTTTTCCTCCTCTTCTT
CCCCCTTTCTCCCCCCCTTTCCCCTCTTCCCTTTCCTTCTCCTTATTTCT
CCTCTTCCGTCTTTTACTTCCTTCCCACTTTCTCCCCTCCTCCCCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTCCTTACTACATAAACATTTACCAAAA
TTAATTAAAGACAGACACAAATAAAATATACTTAGCAATTGATTCTCCTG
TGAAGATACTCATGTAAATAAATTAATGAGATATACACAAGATAGTTATT
TAAAAGGCCAGAATTAAATACCCCAGCACAGACTTGTCTGAGATTGTGTA
TAAATGTGTTTCCTATAATGCTGAGAAGAATGCAATCACATACTGCATCA
TGGGTCATATTTTTTANGTAAGGTTGATCATATTGACAGGCTATGATACG
TGATATCTCCTGCAGCATATGTAGTTAAGAGAAGGTATATTTGATAAAAT
GTGATGACCTACCTATATACAGAATGACACGGAGTACCTACTTCTACTGG
CTATTTTTTTCTGCTGCCTTGATAATAACCCTAATGCGATCTATGCAATC
TAAGGAAGAAAGGGATTACTTTGTCCTATCTTTTCCGGCCCCAGCTCACA
TTGTCAATATTATCCTGATGCAGTGATTATGACCCTTGTTATTTCTTTTC
CCATCTTACTGCCTCTACCCTAAAAATGTGTATTTCAACGCCCCCTTTCG
AAATTATTCTTTTTTCTACCCCTCATTACTTCCCACCCCCCCCTTTTTTT
ATTTCTTAATTCCATTCTTGCCATTCCCCCCCTCCTCCACCCTTTTTACT
CCTTCTGTTTCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_o04.g1 MSMg01no392_o04.g1 CHROMAT_FILE:
MSMg01no392_o04.g1 PHD_FILE: MSMg01no392_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:34 2005
         (340 letters)



>mm_chr6_74386115_74386855
          Length = 741

 Score =  623 bits (322), Expect = 0.0
 Identities = 336/341 (98%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccttactacataaacatttaccaaaattaattaaagacagacacaaataaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttccttactacataaacatttaccaaaattaattaaagacagacacaaataaaatata 260

                                                                       
Query: 61  cttagcaattgattctcctgtgaagatactcatgtaaataaattaatgagatatacacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagcaattgattctcctgtgaagatactcatgtaaataaattaatgagatatacacaa 320

                                                                       
Query: 121 gatagttatttaaaaggccagaattaaataccccagcacagacttgtctgagattgtgta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gatagttatttaaaaggccagaattaaataccccagcacagacttgtctgagattgtgga 380

                                                                       
Query: 181 taaatgtgtttcctataatgctgagaagaatgcaatcacatactgcatcatgggtcatat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatgtgtttcctataatgctgagaagaatgcaatcacatactgcatcatgggtcatat 440

                                                                       
Query: 241 tttttangt-aaggttgatcatattgacaggctatgatacgtgatatctcctgcagcata 299
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttatgtcaaggttgatcatattgacaggctatgatacgtgatatctcctgcagcata 500

                                                    
Query: 300 tgtagttaagagaaggtatatttgataaaatgtgatgacct 340
           ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tgtagttaacagaaggtatatttgataaaatgtgatgacct 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)