Query= MSMg01no393_d05.b1 MSMg01no393_d05.b1 CHROMAT_FILE:
MSMg01no393_d05.b1 PHD_FILE: MSMg01no393_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:02 2005
(597 letters)
>mm_chr6_33410188_33411183
Length = 996
Score = 1108 bits (573), Expect = 0.0
Identities = 588/593 (99%), Gaps = 1/593 (0%)
Strand = Plus / Plus
Query: 5 gaattccactcaagaatggaatagggttggtggctaaggaaagagcttccatgccttcag 64
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattccactcaagaatggaagagggttggtggctaaggaaagagct-ccatgccttcag 263
Query: 65 atgcttggtgcatggtgtatagccttttatagtctctgcctctccatttgtttttcttgg 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 atgcttggtgcatggtgtatagccttttatagtctctgcctccccatttgtttttcttgg 323
Query: 125 gctttttctattcaagctctgttccttagatggagcccagccaagaaaaggcttcaagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctttttctattcaagctctgttccttagatggagcccagccaagaaaaggcttcaagtc 383
Query: 185 ttcctttgcaaagtggcttcttctatattgtcattttggtgtttcaataaagtccctatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcctttgcaaagtggcttcttctatattgtcattttggtgtttcaataaagtccctatt 443
Query: 245 cagccatagccttattaagcaagcaagctgttaaaggggacaagaaacaatacataggac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagccatagccttattaagcaagcaagctgttaaaggggacaagaaacaatacataggac 503
Query: 305 ttttagaagtaaagtttaataaaaagagtggttcacattttcagggatagggtgaccacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 ttttagaagtaaagtttaataaaaagagtggttcacattttcagggatagggtaaccacc 563
Query: 365 atgtaacattcacagggaaaacatggccctcagttcagaaccacaggaactgaattctcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgtaacattcacagggaaaacatggccctcagttcagaaccacaggaactgaattctcc 623
Query: 425 cgcaactggaacaatttactgagagggctccagaactttcatgagagtgtgaacctgaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgcaactggaacaatttactgagagggctccagaactttcatgagagtgtgaacctgaac 683
Query: 485 cttcattgagatatgaggctctctactacaatcagcttgtctgcaacagtatttataacc 544
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 cttcattgagatatgaggctctctactagaatcagcttgtctgcaacagtatttataacc 743
Query: 545 tgtagaaattgtgagaatgatgcactatgttgtattaagctctggatccacag 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtagaaattgtgagaatgatgcactatgttgtattaagctctggatccacag 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_d05.g1 MSMg01no393_d05.g1 CHROMAT_FILE:
MSMg01no393_d05.g1 PHD_FILE: MSMg01no393_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:02 2005
(592 letters)
>mm_chr6_33445784_33446776
Length = 993
Score = 1056 bits (546), Expect = 0.0
Identities = 581/593 (97%), Gaps = 1/593 (0%)
Strand = Plus / Minus
Query: 1 cctctattaccagaaataacttagatatgaaataagaagaaaagggcagcctcctaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 793 cctctattaccagaaataacttagatatgaaataagaagaaaagggcagccccctaaatg 734
Query: 61 tggaaaaagtatttaatttcctgatactttattcagtggcacagcatgtctcactgtgaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tggtaaaagtatttaatttcctgatactttattcagtggcacagcatgtctcactgtgaa 674
Query: 121 cacgctgatagctgttcccttactatcctttcttcagcatatgaaaaagtgaagcaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cacgctgatagctgttcccttactatcctttcttcagcatatgaaaaagtgaagcaaacc 614
Query: 181 aaatgagtattctctgtgcactcattctctgtgggacaggcctggcatcgctaccactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatgagtattctctgtgcactcattctctgtgggacaggcctggcatcgctaccactaa 554
Query: 241 tccccgttcgccaacatgtgtatgtaaggggatgtgcaagtatccatgtcacaccaggag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 553 tccccgttcgccaacatgtgtatgtaaggggatgtgcaagtatccatgtcacacaaggag 494
Query: 301 accataccaacagtggtgcattaggatagaagttgtctttggttttggctctaaaacccc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 493 accataccaacagtggtgcattaggatagaagttgtctttgattttggctctaaaacccc 434
Query: 361 atacagcacatgactgacagaactgtacatggaaataaagctgaactttatttacacatg 420
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 433 atacagcacatgactggcagaactgtacttggaaataaagctgaactttatttacacttg 374
Query: 421 tgccgttcacaccaaaccaaacctattcctacaacaaggataaagatcctgacaggctac 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgcagttcacaccaaaccaaacctattcctacaacaaggataaagatcctgacaggctac 314
Query: 481 tttaaaacaaactcacaaagagacaatggcccaggtgaaacaggtactataaacaacaat 540
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 313 tttaaaacaaactcacaaagagacaacggcccaggtgaaacgggtactataaacaacaat 254
Query: 541 atttatgatn-gggggggggtgagcaatggaaatgatcatcaacactttgctg 592
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atttatgatgtgggggggggtgagcaatggaaatgatcatcaacactttgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
