BAC Information

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BAC

Clone NameMSMg01-393G03
Chromosome6 (Build37)
Map Location 132,425,337 - 132,425,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818
Downstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393G03.T7 (MSMg01no393_g03.b1)MSMg01-393G03.TJ (MSMg01no393_g03.g1)
ACCAG494694AG494695
length772780
length of high quality
(start - end)
508 (34 - 541)360 (63 - 422)
definitionCHROMAT_FILE: MSMg01no393_g03.b1 PHD_FILE: MSMg01no393_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:18 2005CHROMAT_FILE: MSMg01no393_g03.g1 PHD_FILE: MSMg01no393_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGAGA
AGAATACAGTCAAAACTTCTTTCAAATGACATTTTTAGTCATAACAACAT
TTCCTAATAGTTTCTAAAGCTACACAAAACATCAATAGGCAAGCAACTTA
AGAAAGAGATTTTGTCAAGTGATTATTTAGTGGCTCCCATGCACATTCAG
ATTTTCTTCAAGGGCTAGAAATTTCTTCCTCCTAAAGAGCAGTGTGTTTC
TGCAATAATTATGCTTAAAGAGATGCATTATTATATAAATAGCAGTTAGG
AAATTAGAATTAGAAATTAGAATGGCAGTTTCTTTATTCCAATGAGTAGT
CACTAGAATAGTATGGCTTATGTAAACAAGTACAAATGACTTAAATTTAG
GTATCTGTCACTACATTTTGCTGCCTCCAAAATTTTATCTAAACACAAGT
AGATTCCACATATGCATGATGGATATTAAGGTATAGTTAATTTGAGTCTT
TCTGATATAATCTAATACTTATCTATTTTTATATCAAGTGTTTGATTTAA
AATTTATCTATTTTATTATTTATCTATTTTATTTTTTGCTTATACATTTG
ACAGTTAAAATTCTGAAAAATAGCACTATATCCCGATATATTATAATTTT
GAACTTTTCATGACCTTTATTGAACACCTATTTATCCCCTATTTCTGGGT
AGTTCACAAAAAGGGTGGAACCAATTCTTGTTTCCCAATTTCCTGGCATT
GTTAACTCTCCAAGTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAAGAGTCCACCTCCAGTAGATAGAGAGGTCCTTAAGT
AGAGGGACTGGGTTCCTAACTCACAGTCAAAATTTCTCATTCAGAATTAT
TTCAAAGAACTGCAGGTGCCAAATGGAAAAGAGACTGAAAGAAAGGTAGT
CCAATGACCAGTCCAATTTGGGTTCCATCTCATCGTGATTGAGGGCACCG
ACGCCTGAAAATATTACTAATGCTATGATGTGCTCTCAGAAGGGAGTCTG
GGATGCTTGTTCTCCAAGAGGAGCTACCAGCATTTGAATGAGACAGACAA
AGATACTTACAAGCAACCATTGGACTGAAGTCGGGGCCCCCTATGGTTGA
ATTAGGGGAAGGATTGAAGAAGCTGACTGATATAGTGACACCTTATGAAT
ACCTGCTGTTTCATATAATCCTGATCCCTGTAAGTTCCCAGAGACTGAGT
AGGATCTCACCAAGGATTAAACAATGCTCCATTCTGATTTTTTTTGGCAC
CTATATTGCACAGTCCTTATTTGTTTCTCCTATGCAGTGATACGTGCTTA
ATCTTTTACAATACTTGCTTCTCCTCATCACTGATTATACCCTAACGCTT
TTATCAATCTCTTTTCCTTTATTTTTCTCTCTATACATCCATTTATCTCT
TATTCCTACTTCACGCTCTCTCTTTTCTCTCTAATATTTTCGTTTATTCC
CTTATTCTATCCTTATAATCTTCATCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_g03.b1 MSMg01no393_g03.b1 CHROMAT_FILE:
MSMg01no393_g03.b1 PHD_FILE: MSMg01no393_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:18 2005
         (508 letters)



>mm_chr6_132425133_132426040
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagagaagaatacagtcaaaacttctttcaaatgacatttttagtcataacaa 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagagaagaatatagtcaaaacttctttcaaatgacatttttagtcataacaa 264

                                                                       
Query: 65  catttcctaatagtttctaaagctacacaaaacatcaataggcaagcaacttaagaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttcctaatagtttctaaagctacacaaaacatcaataggcaagcaacttaagaaaga 324

                                                                       
Query: 125 gattttgtcaagtgattatttagtggctcccatgcacattcagattttcttcaagggcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattttgtcaagtgattatttagtggctcccatgcacattcagattttcttcaagggcta 384

                                                                       
Query: 185 gaaatttcttcctcctaaagagcagtgtgtttctgcaataattatgcttaaagagatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 gaaatttcttcctcctaaagagcagtgtgtttctgcaataattatgcttaaagaggtgca 444

                                                                       
Query: 245 ttattatataaatagcagttaggaaattagaattagaaattagaatggcagtttctttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattatataaatagcagttaggaaattagaattagaaattagaatggcagtttctttat 504

                                                                       
Query: 305 tccaatgagtagtcactagaatagtatggcttatgtaaacaagtacaaatgacttaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccaatgagtagtcactagaatagtatggcttatgtaaacaagtacaaatgacttaaatt 564

                                                                       
Query: 365 taggtatctgtcactacattttgctgcctccaaaattttatctaaacacaagtagattcc 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 taggtatctgtcactacattttgctgcctccaaaattttatttaaacacaagtagattcc 624

                                                                       
Query: 425 acatatgcatgatggatattaaggtatagttaatttgagtctttctgatataatctaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatatgcatgatggatattaaggtatagttaatttgagtctttctgatataatctaata 684

                                   
Query: 485 cttatctatttttatatcaagtgt 508
           ||||||||||||||||||||||||
Sbjct: 685 cttatctatttttatatcaagtgt 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)