BAC Information

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BAC

Clone NameMSMg01-393G09
Chromosome6 (Build37)
Map Location 19,819,599 - 19,819,727
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393G09.T7 (MSMg01no393_g09.b1)MSMg01-393G09.TJ (MSMg01no393_g09.g1)
ACCAG494706AG494707
length768817
length of high quality
(start - end)
556 (35 - 590)132 (61 - 192)
definitionCHROMAT_FILE: MSMg01no393_g09.b1 PHD_FILE: MSMg01no393_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:19 2005CHROMAT_FILE: MSMg01no393_g09.g1 PHD_FILE: MSMg01no393_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACT
GATTGACACAGAAGAGCTGAGAAGCTCTTGAAGAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATAAAAACAACCCTGAGATTGTACCTCACAA
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGACAA
GGATGTGGAGAAAGCGAAATATTCCTTCATTGTTGGAGGGATTGCTAGCT
GATACAGCCATGCTGGAAATCAATCTTGAGGTTCCTTAGAAAATTGGACA
TAGTACTACTGGATGATCTAGCAGTTCCTCTCCTGGGCATATATATACCC
AGAAGATGCTCCAAATTATAATAAGGTCACATGCTTCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAATCTGGAAAGAACCCAGATGTCCCTCA
ACAGAAGAATGGATACAGAAAATGTGCTACATTTACACAATTGAGTACTA
CTCAGCAATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGC
ATCTGAAGGATATTATCCTGAGTGAGGTAACCCAATCACAAAAGAACACG
CATGATAGGCACTCACTGATAAGTGGATTTTAGCCCAGAAACTTAAAATA
TACAAGATACAATTTGCAAAACACCAAATCTAGAAGGAAGACCCAAGCGT
GGGATTTTCTTTTCCCCCCTTAATACCGAAATAAAATACCCCGCGGAAGG
CGTTTCCCAATGTTAATT
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATTTGTTGTAGATGCTGCTCTCAGGATCCCAGATTGAACA
TTTGAATAATGTATAAGTACTTCTGTTGGTTTGAATATGGGTTTTACAAT
GTCCACTTATGCTGTTGGAATGAACAGTGTTAATACCACTAGGAAAAGAC
ATTTTGTATTTATTCATTTTGTTTAGATGAACTATCACTTTATCAATAAT
TGATTTTATAAAATGCAAAATATTATCAAGGTATCAAGAAGAGGCTTGGA
GAATGCATTCTTTATACTGTCTTCCAGCCACCATTGCCAGTGTGTTACTC
AAAGCTGCCTACCTGCTTCTCATTGCATGTGTTTGCTACTAACCTCGTTA
TCACCATTTGCTTGTCTGACTCCAGTTTATATTTACCTGTTCAACTCCTT
CTACTGTTTTTTTTACTATCCTTACTCCTGTTTCCTCTTATCCTTTATTT
GTCCTAGATACACATCTCCTTGTTTTTTGTGTAATCCCTCCATTCTTTTT
CTATAGACCTCGATCTTCTTATTTTCCTTGCTCTTATTTTATTTTTCTTT
TACCCCATTACCTCTTAAAACCCACTATTTTCTTCTCTTCTTCTCTCCTG
TCTTCTGACTTTCTATGCCCTTCCCCCCTTTCCCATCCCTTTCTCGTTTT
TTTTTTCCCTCTTACTCTTATTTATTACTTCTTCATCTTCTCTCCCAACT
TATCATACCCTCCAATTCGTTTATCTTTTTTGCCGTTTTTCCTATGACTT
TTTTCTTTCTACTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_g09.g1 MSMg01no393_g09.g1 CHROMAT_FILE:
MSMg01no393_g09.g1 PHD_FILE: MSMg01no393_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:19 2005
         (132 letters)



>mm_chr6_19819399_19819930
          Length = 532

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgttgtagatgctgctctcaggatcccagattgaacatttgaataatgtataagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgttgtagatgctgctctcaggatcccagattgaacatttgaataatgtataagtac 260

                                                                       
Query: 61  ttctgttggtttgaatatgggttttacaatgtccacttatgctgttggaatgaacagtgt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgttggtttgaatatgggttttataatgtccacttatgctgttggaatgaacagtgt 320

                    
Query: 121 taataccac 129
           |||||||||
Sbjct: 321 taataccac 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)