Query= MSMg01no393_m04.b1 MSMg01no393_m04.b1 CHROMAT_FILE:
MSMg01no393_m04.b1 PHD_FILE: MSMg01no393_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:51 2005
(620 letters)
>mm_chr6_77367151_77368170
Length = 1020
Score = 1123 bits (581), Expect = 0.0
Identities = 608/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagactcttaccatttatagtttactgtctttgctatgtacttgaaggaaacg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaattcagagactcctaccatttatagtttactgtctttgctatgtacttgaaggaaacg 897
Query: 65 atgtccactctcagtttcctgctccagatgacataccttcactcagcctctgtgatgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 atgtccactctcagtttcctgctccagatgacataccttcactcagcctctgtgatgctt 837
Query: 125 atcttccaggaactctaagtttgtctacaagttacattttttatggtattttaccacagt 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 836 atcttccaggaactctaagtttgtctacaagttacatttgttatggtattttaccacagt 777
Query: 185 agtagagaaatacttagtgcagtagtaaataattaatccagttctaggaaaggaaaactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agtagagaaatacttagtgcagtagtaaataattaatccagttctaggaaaggaaaactg 717
Query: 245 gaagaaaggaatattcatataatctattaacctaaggcctgagatccattcgcacacttg 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 716 gaagaaaggaatattcatataatctattaacctaaggcctgagatccatttgcacacttg 657
Query: 305 gggaccacaagag-agaaaatttaaaatatccattccagcttatcagtgtcaatgcctct 363
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 656 gggaccacaagagca-aaaattgaaaatatccattccagcttatcagtgtcaatgcctcc 598
Query: 364 ttaacaatctttcttaacttcaagagtgaattttccctctagagatgtcagcttttgtgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttaacaatctttcttaacttcaagagtgaattttccctctagagatgtcagcttttgtgt 538
Query: 424 tgctcacaaaccgattagtctcttatctagaagtgtctatagaagttaaatattgccaac 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 537 tgctcacaaaccgattagtctcttatctaggagtgtctatagaagttaaatattgccaac 478
Query: 484 atacttttatgttagatctgagaatgcataaggggttggtttacatgaagcaagggatga 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 477 atacttttatgttagatctgagaatgcataaggggttgctttacatgaagcaagggatga 418
Query: 544 aaagaactgaaaatcaatgtatataccatttagactcttctctactctcataagagagct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaagaactgaaaatcaatgtatataccatttagactcttctctactctcataagagagct 358
Query: 604 atataaaatccctctgt 620
|||||||||||||||||
Sbjct: 357 atataaaatccctctgt 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_m04.g1 MSMg01no393_m04.g1 CHROMAT_FILE:
MSMg01no393_m04.g1 PHD_FILE: MSMg01no393_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:51 2005
(536 letters)
>mm_chr6_77219185_77220119
Length = 935
Score = 975 bits (504), Expect = 0.0
Identities = 528/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Plus
Query: 1 acttagatcaccagctcaccctgaggaattcttctcaaagaattttgtctaaacttgccc 60
|||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 201 acttagataaccagccccccctgaagaattcttctcaaagaattttgtctaaacttgctc 260
Query: 61 ctacacgaaatttagtataaaaacagggtttccatcttgcaattgaggcagaaataacgt 120
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctatacgaaatttagtataaaaacagggtt-ccatcttgcaattgaggcagaaataacgt 319
Query: 121 atgtcagagtttataaacaaccatgctaatgtacaattggcttgaaactatcttttcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtcagagtttataaacaaccatgctaatgtacaattggcttgaaactatcttttcctg 379
Query: 181 tatcacagaaaaatcaacaagttgtatgaaaaatacattcacttagaatagcctcccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatcacagaaaaatcaacaagttgtatgaaaaatacattcacttagaatagcctcccctc 439
Query: 241 tctctttctttctaccagcctctctccatccctcctttcccttccttcttttctctcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctctttctttctaccagcctctctccatccctcctttcccttccttcttttctctcttt 499
Query: 301 ctttttaaagaaaagattctcaacatgaattacctacaattttctcatctattatcaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttttaaagaaaagattctcaacatgaattacctacaattttctcatctattatcaaga 559
Query: 361 taggatttaacatcctaataatattgccgatgagaaaggaaaaacagataaaataaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taggatttaacatcctaataatattgccgatgagaaaggaaaaacagataaaataaaatc 619
Query: 421 tataatagagaaacatatgacatccaatttagactatcaattattaatttaaaaataaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tataatagagaaacatatgacatccaatttagactatcaattattaatttaaaaataaaa 679
Query: 481 ggaaaatatgaacttaaataaattcatttattctattgactgctataaaatgccat 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 ggaaaatatgaacttaaataaattcatttattctattgattgctataaaatgccat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
