BAC Information

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BAC

Clone NameMSMg01-394L16
Chromosome6 (Build37)
Map Location 36,711,496 - 36,711,709
singlet/doubletsinglet
Overlap genePtn
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, LOC100039514
Downstream geneDgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394L16.T7 (MSMg01no394_l16.b1)MSMg01-394L16.TJ (MSMg01no394_l16.g1)
ACCAG495717AG495718
length815816
length of high quality
(start - end)
250 (73 - 322)88 (119 - 206)
definitionCHROMAT_FILE: MSMg01no394_l16.b1 PHD_FILE: MSMg01no394_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:13 2005CHROMAT_FILE: MSMg01no394_l16.g1 PHD_FILE: MSMg01no394_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCG
GAATTCCACTTTATCGCACTATAAAGTAATTACTTATTGGCAGTAGGAAG
TTCTCCATGATAAACCTTCTATCAATTTTGAAGCTTGTTTCAAATTTTTA
CAACACCAGATTAAATTTTTTAAAAGGCATCTTTAAAATGCTCTACATTA
TGTAAGAGGTAGTAATGTTTGACATACGACGGAAATAATTATTCCAAGTG
TTTTAATTATGTTTTCTAACATTACATATATATATACACACACACACACA
CACACACACACACACACACACACTTCTTCTCACATATATATATATATATA
TATATATATATATATATAATGTCCCCATTACCCTTCCCCCTCCTTTTTTT
TTTTATCCTACCTTCCCCCCCCCCCCCCTCAATTTTCCACCCCTTACTTT
CTTTTCTTTACCCTTTTTCCTTCCCTTTTCCCCTCCTCTTCTCTCCCTTC
CTCCTCTTCCCCTTCTCTACCATCTTTCTTCTCCATTCCCCCTTTCCCTC
CCCCCTTCTTCCTTTCTTCCCCTACTTTAACCTCCCCCCTTCCCCCTCCT
TTTTCCCCTCCCCCTCTTTTCCTCTCTCCACACCCTCCTCTTTCTCCCTT
TATCCTTTCTCTCTTCTCTTTCTCTCCCTTCTCCCCTTCCTCTTTTTTCA
CTTCCTTCACTATTCCCACCCTCCTCCACCTTTTCATATTTCCCATCATT
CTCTTTTTATCCCTCTTCCCTCCTCTTCTTCCCCACTCTTTTTCCATTCT
ATTCGTTACTCCCTA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAAGAAATTCCTGCAGGTT
AAAAAGGGTTCTGGGCAAAATATCTAAATATGGAGGGAATAGTCTAACTA
CTGTGACATCTTCTAATTATTTACACATATTTTTAAGAGTGCCTTATCTA
TTTACTAAGGAAAATCATTCTATGTTTCTTCTCTTCCTGTCCTGCAGCAT
TGTAAAACTATTCCTACTTTTTCTCTAGCTGGTAATCCGGTTGTTATATT
GATATATACCGTGAATCTTTCTTATCTGTCTTATACACACCTATGACTTG
CTTTTTTTTTTTTTGCTCTCTTTTTTCCCTTCTCCCGATATATCTATTCT
CTCTCCTTCTCTTCTTAACATTCCTTTTCCCCGCCCCCCTCCCTTTTTTT
TTTTCCCCTTCCCTCTTCTCTCCTTTTTTTTTTTCTTCCCCCCCCCTTTC
CTCTTCCTCTTCCTCTTCCTTTTTTTCCCTCCTTTCATTTCCTTTCCCCT
TCTCATTCCCTTTTTCCTTCCCCCCCCCCTTCTCTCCGTCCTTCCCCTTT
TTTCTCTCCTTTTCTCTTTTCCCCTTTCCTTTTTTCTTTTCTCTTCTCCT
TTTTTTTCTTTTCCCCATCCTCCTCGTTTTTTTCCTGCTCCCTATTGTTC
GTATAAATTTTTCTTCCCCACCCCCTCCCTATAATTTTTTTAATCTTCTA
TACCTTCTACCCCTATTTCCATTTCCCCTTTACTCCCTTTCTTCTCCCTC
ATCTCTTTTATTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_l16.b1 MSMg01no394_l16.b1 CHROMAT_FILE:
MSMg01no394_l16.b1 PHD_FILE: MSMg01no394_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:13 2005
         (250 letters)



>mm_chr6_36711309_36711958
          Length = 650

 Score =  375 bits (194), Expect = e-108
 Identities = 209/214 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtaattacttattggcagtaggaagttctccatgataaaccttctatcaattttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 401 aaagtaattacttattggcagtaggaagttctccatgataaaccttcaatcaattttgaa 342

                                                                       
Query: 61  gcttgtttcaaatttttacaacaccagattaaattttttaaaaggcatctttaaaatgct 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcttgtttcaaacttttacaacaccagattaaattttttaaaaggcatctttaaaatgct 282

                                                                       
Query: 121 ctacattatgtaagaggtagtaatgtttgacatacgacggaaataattattccaagtgtt 180
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 281 ctacattatgtaagaggtagtaatgtttgacataggagggaaataattattccaagtgtt 222

                                             
Query: 181 ttaattatgttttctaacattacatatatatata 214
           |||||||||||||||||||||| |||||||||||
Sbjct: 221 ttaattatgttttctaacattatatatatatata 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)