BAC Information

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BAC

Clone NameMSMg01-395K22
Chromosome6 (Build37)
Map Location 30,473,179 - 30,473,545
singlet/doubletsinglet
Overlap genenone
Upstream geneIrf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik
Downstream geneCpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395K22.T7 (MSMg01no395_k22.b1)MSMg01-395K22.TJ (MSMg01no395_k22.g1)
ACCAG496441AG496442
length803855
length of high quality
(start - end)
367 (70 - 436)136 (76 - 211)
definitionCHROMAT_FILE: MSMg01no395_k22.b1 PHD_FILE: MSMg01no395_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:36 2005CHROMAT_FILE: MSMg01no395_k22.g1 PHD_FILE: MSMg01no395_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGATCCGCGGAAT
TCTCATCTGGTTGCCACTGCAGACTCCTAGGTGAGGGGTTCTATTTCCTC
TTTACCTCCACACAATTTTCTCTGTCTTTCGTTCCTGCTTTGGGGTAAAT
CCAAGTAACAAAAACATAAATGGTGTTAATGGCAACCATTTAGAGAATGT
TTGCCGAATTCTAGGCACAAGTAAGCATTTGTAAAAACTATTTTTCACAA
ACCTGCAAGAAGGTATTATTTTCAACCTGACAGGTGATGAAATTGAAGCA
TGGGGTAGTTAACATATCCAAGGTCTTACAGTTGGTAAAGGTGACAGATC
TGGCGACAGATAGCTAACCCCCATCATGACACTATATTATCCATTTTATT
TCATTGTTGTACATTTGTTTGTGTGTATGTGTATGGTCAGAGGTCACGGT
GGAGACCAGAGGACACTTTGCTGGAATCTGTTCTCTCCTGCACCAAGTGG
GTCCCCTAATATGGAACTCAATTTTGTTAAGCTTGGTGCCCATTGACTTT
TATCTCTCGAAACACTATTTCTGGCCCTAATCACGGTGGTATTTTTTAAA
GAAGTCCTACCTTCTCTTTCTTCCTTATATGCCCCAACGCTCTTTTTTGT
ACCCAAAATCAAACCGTCTCCCTTTTTCTTTATAATTTTTTTTTGTTCTT
TCTCCCCACATATTATTCCGTCTATTCCTTCTTTTTTCCCTTCCCACTCA
ATTACCTCCACTACCCTTTTTATCTTTTTCTTTCGCTTTTTTTACTTCTT
CTG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGTGATGACAGAATCAGCATTGAA
TGTGATCCAGAGTAAAGTAAATGCTCATTTTGTCCCAAATAAGTAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
GATAGATGGNCGCCCCCNCCCCNNCCCCCCCCCGCGTTCTCCGCCTCTGC
CTTTTTTTTGCTTCGCCCCTTCTTTCTCTTGTTTTTCTTTCCTTCCTTCT
CCTTTCCCTTCCCCCCTTTTTTTGTTTTCNTCGGCCCCGCCCCCTGTTCC
CGTCCTTTTTTTTCTCTCCTCCCTTCTTCTTTATTTCCCCTCTTTCTTCT
CCCGCCCTTCCCCCCCCCCCCCCTTTTTTTCATCCCTTTTTCTTTTCCCT
TTTCCCTCTCCCTTTATCCTTTCTTTTTTTTTTCTTTTGTATCCTCTTCC
CCCGTATTTTCTATTCCCCTTCTTTCTCTTTTTTTTTTTATGCGACCTTT
CTCTTTCCCCTGTTTTTTTTTCCTTTTTGCCTTTCTTTTTCTTTTCCCCC
CCCTTTTTTACCCGTTTTTCCCGCCTTTTCCGCTTTTTTCCTCTTCCCCC
TTCCTCCTTCTTATCTGTTTCGCTTCCCTTTCCCGTCGCCCTTTTTTTTC
TTTTTTCCCCATTTATCTCCCCTGTTCTCTTCTTTTTCCTTCTTCCCCCC
CTGTTTTATTCCTGTTTCCATATTTCTCTTTTTATGACTATATTCCTACC
CTCTTACCTCCCTATTATGTTTCTCTTCCCCATTTCTCTTTTTCCCTTTC
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_k22.b1 MSMg01no395_k22.b1 CHROMAT_FILE:
MSMg01no395_k22.b1 PHD_FILE: MSMg01no395_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:36 2005
         (367 letters)



>mm_chr6_30472979_30473745
          Length = 767

 Score =  671 bits (347), Expect = 0.0
 Identities = 362/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagactcctaggtgaggggttctatttcctctttacctccacacaattttctctgtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactcctaggtgaggggttctatttcctctttacctccacacaattttctctgtcttt 260

                                                                       
Query: 61  cgttcctgctttggggtaaatccaagtaacaaaaacataaatggtgttaatggcaaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttcctgctttggggtaaatccaagtaacaaaaacataaatggtgttaatggcaaccat 320

                                                                       
Query: 121 ttagagaatgtttgccgaattctaggcacaagtaagcatttgtaaaaactatttttcaca 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagagaatgtttgctgaattctaggcacaagtaagcatttgtaaaaactatttttcaca 380

                                                                       
Query: 181 aacctgcaagaaggtattattttcaacctgacaggtgatgaaattgaagcatggggtagt 240
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccgcaagaaagtattattttcaacctgacaggtgatgaaattgaagcatggggtagt 440

                                                                       
Query: 241 taacatatccaaggtcttacagttggtaaaggtgacagatctggcgacagatagctaacc 300
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacatatccaaggtcagacagttggtaaaggtgacagatctggcgacagatagctaacc 500

                                                                       
Query: 301 cccatcatgacactatattatccattttatttcattgttgtacatttgtttgtgtgtatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccatcatgacactatattatccattttatttcattgttgtacatttgtttgtgtgtatg 560

                  
Query: 361 tgtatgg 367
           |||||||
Sbjct: 561 tgtatgg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)