Query= MSMg01no396_b05.b1 MSMg01no396_b05.b1 CHROMAT_FILE:
MSMg01no396_b05.b1 PHD_FILE: MSMg01no396_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:07 2005
(516 letters)
>mm_chr6_63332190_63333105
Length = 916
Score = 934 bits (483), Expect = 0.0
Identities = 495/499 (99%)
Strand = Plus / Minus
Query: 16 gaattctctatataatttcaatattaactctctattggatgtagggatggtaaagatatt 75
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattctctatataatttgaatattaactctctattggatgtagggatggtaaagatatt 753
Query: 76 tgccaatctgtgggttgtcattttgtcttacttaatattggccacttagctgagtctaaa 135
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 752 tgccaatctgtgggttgtcattttgtcttacttaatattggccacttagctgagactaaa 693
Query: 136 gagagttacatcattaaattctattcaaagccaacccatgaaatatgaacaaatataaaa 195
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gagagttacatcattaaactctattcaaagccaacccatgaaatatgaacaaatataaaa 633
Query: 196 acaaaagcttgtaccttctaggtgaggtactcgcattgtgcagcaatgtggtttatttca 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 acaaaagcttgtaccttctaggtgaggtactcgcattgtgcagcaatgtggtttatttca 573
Query: 256 tatttttaacagaaatttatacaaaatgtcatttaaattgatctactagtcacaaaattt 315
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 572 tatttttaacagaaatttatacaaaatgtcatttcaattgatctactagtcacaaaattt 513
Query: 316 caaactcactagaatgttataatgaatatgaatatagagaacatgatagaagactataag 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caaactcactagaatgttataatgaatatgaatatagagaacatgatagaagactataag 453
Query: 376 ctgtttctaaatgaacaaataaatgaccaaaatgtacgcacagataaaagctttgtaact 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgtttctaaatgaacaaataaatgaccaaaatgtacgcacagataaaagctttgtaact 393
Query: 436 gagtcaaccacttgcaatggaaatactcaaaatctacctatgtttttaattaatggaagg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagtcaaccacttgcaatggaaatactcaaaatctacctatgtttttaattaatggaagg 333
Query: 496 tagtgtaaaatcaactgta 514
|||||||||||||||||||
Sbjct: 332 tagtgtaaaatcaactgta 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_b05.g1 MSMg01no396_b05.g1 CHROMAT_FILE:
MSMg01no396_b05.g1 PHD_FILE: MSMg01no396_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:07 2005
(461 letters)
>mm_chr6_63216526_63217385
Length = 860
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 tgaagcagatttacatctaaactcagttggaatgggtacctaaaactgatgaagtactta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgaagcagatttacatctaaactcagttggaatgggtacctaaaattgatgaagtactta 260
Query: 61 atctactcacaatcaacatcattaaattgtcatatgccattggcagtacatttcagatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctactcacaatcaacatcattaaattgtcatatgccattggcagtacatttcagatcg 320
Query: 121 acagatcattattaggagccaagactctggtaaaattaaggtgaagtaaaaccaggagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagatcattattaggagccaagactctggtaaaattaaggtgaagtaaaaccaggagct 380
Query: 181 gatccatttgcagaaaaaaaatcagcaatttgccagcatacaaaatcatatgaatggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatccatttgcagaaaaaaaatcagcaatttgccagcatacaaaatcatatgaatggtgc 440
Query: 241 tgcatcaattactctgtagctagtcagttgcttcttggatgaaataacaaacacatggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatcaattactctgtagctagtcagttgcttcttggatgaaataacaaacacatggtt 500
Query: 301 agttgctctcagagatagactcgtaactctcaacaaggaacaaactaagtgtagactgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgctctcagagatagactcgtaactctcaacaaggaacaaactaagtgtagactgca 560
Query: 361 ccaggccattgtattatatttttgaacaagattggatcctgtattttttgttgggtatat 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ccaggccattgtattatatttttgaacaagattggatcctgtattttt-gttgggtatat 619
Query: 421 ctcatgaccagacttgactgccattgctcttctgttatctg 461
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 ctcatgaccagacttgactgtcattgctcttctgttatctg 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
